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  5. Zm00001d013722_T001

Zm00001d013722_T001


Description : AP2/B3-like transcriptional factor family protein


Gene families : OG_01_0003619 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003619_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d013722_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d013722_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_199
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_119


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR015300 DNA-bd_pseudobarrel_sf Gene3D 21 122
IPR003340 B3_DNA-bd SMART 29 120
IPR003340 B3_DNA-bd SMART 237 333
IPR015300 DNA-bd_pseudobarrel_sf SUPERFAMILY 27 127
IPR003340 B3_DNA-bd ProSiteProfiles 234 333
IPR003340 B3_DNA-bd ProSiteProfiles 26 120
IPR015300 DNA-bd_pseudobarrel_sf SUPERFAMILY 228 332
IPR003340 B3_DNA-bd CDD 27 118
IPR003340 B3_DNA-bd Pfam 29 118
IPR003340 B3_DNA-bd Pfam 264 332
IPR015300 DNA-bd_pseudobarrel_sf Gene3D 213 333
IPR003340 B3_DNA-bd CDD 231 331
IPR044837 REM16-like PANTHER 42 332
IPR003340 B3_DNA-bd Pfam 37 118
IPR003340 B3_DNA-bd Pfam 267 332
IPR003340 B3_DNA-bd SMART 29 120
IPR003340 B3_DNA-bd SMART 237 333
IPR015300 DNA-bd_pseudobarrel_sf SUPERFAMILY 228 332
IPR003340 B3_DNA-bd CDD 231 331
IPR003340 B3_DNA-bd ProSiteProfiles 26 120
IPR015300 DNA-bd_pseudobarrel_sf Gene3D 213 333
IPR015300 DNA-bd_pseudobarrel_sf SUPERFAMILY 27 127
IPR015300 DNA-bd_pseudobarrel_sf Gene3D 21 122
IPR003340 B3_DNA-bd ProSiteProfiles 234 333
IPR003340 B3_DNA-bd CDD 27 118

No CAZYmes available for this sequence

No external refs found!