Zm00001d013778_T003

Description : lysyl-tRNA synthetase 1

Gene families : OG_01_0006203 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006203_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d013778_T003
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d013778_T003
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_114
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_152

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0004824	lysine-tRNA ligase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	GOs from InterProScan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	ISM	GOs from InterProScan
BP	GO:0006430	lysyl-tRNA aminoacylation	ISM	GOs from InterProScan
BP	GO:0006520	amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR012340	NA-bd_OB-fold	Gene3D	183	325
IPR002313	Lys-tRNA-ligase_II	NCBIfam	350	704
IPR006195	aa-tRNA-synth_II	ProSiteProfiles	374	703
IPR034762	Lys-tRNA-ligase_II_bac/euk	PIRSF	94	135
IPR034762	Lys-tRNA-ligase_II_bac/euk	PIRSF	153	705
IPR002313	Lys-tRNA-ligase_II	Hamap	188	705
IPR004364	Aa-tRNA-synt_II	Pfam	352	701
IPR044136	Lys-tRNA-ligase_II_N	CDD	236	363
IPR045864	aa-tRNA-synth_II/BPL/LPL	SUPERFAMILY	352	702
IPR045864	aa-tRNA-synth_II/BPL/LPL	Gene3D	348	705
IPR018149	Lys-tRNA-synth_II_C	CDD	367	703
IPR004365	NA-bd_OB_tRNA	Pfam	237	316
IPR018149	Lys-tRNA-synth_II_C	PRINTS	452	469
IPR018149	Lys-tRNA-synth_II_C	PRINTS	389	399
IPR018149	Lys-tRNA-synth_II_C	PRINTS	586	602
IPR018149	Lys-tRNA-synth_II_C	PRINTS	405	421
IPR018149	Lys-tRNA-synth_II_C	PRINTS	434	447
IPR012340	NA-bd_OB-fold	SUPERFAMILY	180	324
IPR002313	Lys-tRNA-ligase_II	Hamap	188	705
IPR045864	aa-tRNA-synth_II/BPL/LPL	SUPERFAMILY	352	702
IPR004365	NA-bd_OB_tRNA	Pfam	237	315
IPR004364	Aa-tRNA-synt_II	Pfam	352	701
IPR044136	Lys-tRNA-ligase_II_N	CDD	236	363
IPR045864	aa-tRNA-synth_II/BPL/LPL	Gene3D	348	705
IPR018149	Lys-tRNA-synth_II_C	PRINTS	452	469
IPR018149	Lys-tRNA-synth_II_C	PRINTS	389	399
IPR018149	Lys-tRNA-synth_II_C	PRINTS	586	602
IPR018149	Lys-tRNA-synth_II_C	PRINTS	405	421
IPR018149	Lys-tRNA-synth_II_C	PRINTS	434	447
IPR002313	Lys-tRNA-ligase_II	TIGRFAM	350	704
IPR034762	Lys-tRNA-ligase_II_bac/euk	PIRSF	153	705
IPR034762	Lys-tRNA-ligase_II_bac/euk	PIRSF	94	135
IPR018149	Lys-tRNA-synth_II_C	CDD	367	703
IPR006195	aa-tRNA-synth_II	ProSiteProfiles	374	703
IPR012340	NA-bd_OB-fold	SUPERFAMILY	180	324

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d013778_T003

Expression Profile

Co-expression Networks

Functional Annotation