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  5. Zm00001d013812_T001

Zm00001d013812_T001


Description : RNA-binding protein 45A


Gene families : OG_01_0016111 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016111_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d013812_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d013812_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_288
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_173


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR035979 RBD_domain_sf SUPERFAMILY 159 251
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 254 375
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 152 253
IPR000504 RRM_dom Pfam 72 138
IPR000504 RRM_dom Pfam 273 337
IPR000504 RRM_dom Pfam 165 235
IPR000504 RRM_dom ProSiteProfiles 271 343
IPR035979 RBD_domain_sf SUPERFAMILY 260 370
IPR000504 RRM_dom ProSiteProfiles 70 150
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 69 149
IPR035979 RBD_domain_sf SUPERFAMILY 49 152
IPR000504 RRM_dom ProSiteProfiles 163 242
IPR000504 RRM_dom SMART 272 339
IPR000504 RRM_dom SMART 71 146
IPR000504 RRM_dom SMART 164 238
IPR035979 RBD_domain_sf SUPERFAMILY 49 152
IPR000504 RRM_dom ProSiteProfiles 70 150
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 152 253
IPR000504 RRM_dom Pfam 273 337
IPR000504 RRM_dom Pfam 72 138
IPR000504 RRM_dom Pfam 165 235
IPR000504 RRM_dom ProSiteProfiles 163 242
IPR035979 RBD_domain_sf SUPERFAMILY 260 370
IPR000504 RRM_dom ProSiteProfiles 271 343
IPR035979 RBD_domain_sf SUPERFAMILY 159 251
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 254 375
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 69 149
IPR000504 RRM_dom SMART 272 339
IPR000504 RRM_dom SMART 71 146
IPR000504 RRM_dom SMART 164 238

No CAZYmes available for this sequence

No external refs found!