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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0015625 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015625_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d014663_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d014663_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_205 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_173 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 315 | 384 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 385 | 458 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 357 | 391 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 148 | 314 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 255 | 287 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 185 | 218 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 219 | 252 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 397 | 426 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 290 | 322 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 360 | 392 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 392 | 426 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 217 | 251 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 360 | 405 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 181 | 229 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 286 | 335 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 287 | 321 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 182 | 216 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 252 | 286 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 219 | 252 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 290 | 322 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 185 | 218 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 397 | 426 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 255 | 287 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 360 | 392 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 392 | 426 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 252 | 286 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 181 | 229 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 286 | 334 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 360 | 405 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 287 | 321 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 357 | 391 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 217 | 251 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 315 | 384 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 385 | 458 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 148 | 314 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 182 | 216 |
No CAZYmes available for this sequence
| No external refs found! |