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  5. Zm00001d014900_T020

Zm00001d014900_T020


Description : transcription factor jumonji (jmjC) domain-containing protein


Gene families : OG_01_0002126 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002126_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d014900_T020
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d014900_T020
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_24


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001606 ARID_dom ProSiteProfiles 85 188
IPR003347 JmjC_dom ProSiteProfiles 450 616
IPR003349 JmjN ProSiteProfiles 18 59
IPR001606 ARID_dom Pfam 89 184
IPR011011 Znf_FYVE_PHD SUPERFAMILY 1503 1559
IPR019786 Zinc_finger_PHD-type_CS ProSitePatterns 1768 1809
IPR019787 Znf_PHD-finger ProSiteProfiles 1765 1812
IPR036431 ARID_dom_sf SUPERFAMILY 68 188
IPR011011 Znf_FYVE_PHD SUPERFAMILY 1757 1810
IPR001965 Znf_PHD SMART 311 357
IPR001965 Znf_PHD SMART 1767 1810
IPR001965 Znf_PHD SMART 1512 1556
IPR013083 Znf_RING/FYVE/PHD Gene3D 1502 1571
IPR019787 Znf_PHD-finger ProSiteProfiles 309 359
IPR019786 Zinc_finger_PHD-type_CS ProSitePatterns 312 356
IPR003349 JmjN SMART 17 58
IPR013083 Znf_RING/FYVE/PHD Gene3D 258 352
IPR019787 Znf_PHD-finger Pfam 1768 1809
IPR019787 Znf_PHD-finger Pfam 312 356
IPR011011 Znf_FYVE_PHD SUPERFAMILY 292 357
IPR001606 ARID_dom SMART 86 189
IPR036431 ARID_dom_sf Gene3D 96 199
IPR003349 JmjN Pfam 19 52
IPR004198 Znf_C5HC2 Pfam 692 743
IPR003347 JmjC_dom SMART 450 616
IPR013637 Lys_sp_deMease-like_dom Pfam 1007 1260
IPR013637 Lys_sp_deMease-like_dom Pfam 955 1049
IPR013083 Znf_RING/FYVE/PHD Gene3D 1752 1811
IPR003347 JmjC_dom Pfam 483 599
IPR011011 Znf_FYVE_PHD SUPERFAMILY 292 357
IPR003349 JmjN SMART 17 58
IPR003349 JmjN Pfam 19 52
IPR003347 JmjC_dom SMART 450 616
IPR003349 JmjN ProSiteProfiles 18 59
IPR013083 Znf_RING/FYVE/PHD Gene3D 258 352
IPR001606 ARID_dom Pfam 90 184
IPR019787 Znf_PHD-finger ProSiteProfiles 309 359
IPR003347 JmjC_dom Pfam 483 599
IPR004198 Znf_C5HC2 Pfam 692 742
IPR019787 Znf_PHD-finger Pfam 1767 1811
IPR019787 Znf_PHD-finger Pfam 312 358
IPR036431 ARID_dom_sf SUPERFAMILY 68 188
IPR001606 ARID_dom SMART 86 189
IPR013083 Znf_RING/FYVE/PHD Gene3D 1752 1811
IPR013637 Lys_sp_deMease-like_dom Pfam 1007 1246
IPR013637 Lys_sp_deMease-like_dom Pfam 957 1049
IPR019786 Zinc_finger_PHD-type_CS ProSitePatterns 1768 1809
IPR011011 Znf_FYVE_PHD SUPERFAMILY 1757 1810
IPR011011 Znf_FYVE_PHD SUPERFAMILY 1503 1559
IPR019786 Zinc_finger_PHD-type_CS ProSitePatterns 312 356
IPR036431 ARID_dom_sf Gene3D 96 199
IPR003347 JmjC_dom ProSiteProfiles 450 616
IPR013083 Znf_RING/FYVE/PHD Gene3D 1502 1571
IPR019787 Znf_PHD-finger ProSiteProfiles 1765 1812
IPR001965 Znf_PHD SMART 311 357
IPR001965 Znf_PHD SMART 1767 1810
IPR001965 Znf_PHD SMART 1512 1556
IPR001606 ARID_dom ProSiteProfiles 85 188

No CAZYmes available for this sequence

No external refs found!