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  5. Zm00001d014998_T001

Zm00001d014998_T001


Description : global transcription factor C


Gene families : OG_01_0002682 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002682_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d014998_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d014998_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_11
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_24


Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR033825 Spt16_M24 CDD 192 432
IPR029149 Creatin/AminoP/Spt16_NTD Gene3D 15 184
IPR013953 FACT_Spt16 Pfam 543 694
IPR013953 FACT_Spt16 SMART 543 694
IPR011993 PH-like_dom_sf Gene3D 812 943
IPR048969 SPT16_C Pfam 948 1028
IPR029148 FACT-Spt16_Nlobe Pfam 16 179
IPR019410 Methyltransf_16 Pfam 1097 1244
IPR036005 Creatinase/aminopeptidase-like Gene3D 185 446
IPR000994 Pept_M24 Pfam 194 426
IPR029063 SAM-dependent_MTases_sf Gene3D 1088 1262
IPR029063 SAM-dependent_MTases_sf SUPERFAMILY 1108 1244
IPR013719 RTT106/SPT16-like_middle_dom SMART 819 909
IPR013719 RTT106/SPT16-like_middle_dom Pfam 821 908
IPR036005 Creatinase/aminopeptidase-like SUPERFAMILY 189 452
IPR040258 Spt16 PANTHER 12 1046
IPR029148 FACT-Spt16_Nlobe SMART 16 180
IPR000994 Pept_M24 Pfam 194 426
IPR033825 Spt16_M24 CDD 192 432
IPR019410 Methyltransf_16 Pfam 1097 1244
IPR011993 PH-like_dom_sf Gene3D 812 943
IPR029148 FACT-Spt16_Nlobe SMART 16 180
IPR029149 Creatin/AminoP/Spt16_NTD Gene3D 15 184
IPR013719 RTT106/SPT16-like_middle_dom SMART 819 909
IPR013953 FACT_Spt16 SMART 543 694
IPR013719 RTT106/SPT16-like_middle_dom Pfam 824 907
IPR029063 SAM-dependent_MTases_sf SUPERFAMILY 1108 1244
IPR036005 Creatinase/aminopeptidase-like Gene3D 185 446
IPR013953 FACT_Spt16 Pfam 543 694
IPR029148 FACT-Spt16_Nlobe Pfam 16 179
IPR036005 Creatinase/aminopeptidase-like SUPERFAMILY 189 452

No CAZYmes available for this sequence

No external refs found!