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  5. Zm00001d015212_T006

Zm00001d015212_T006


Description : DNA helicase (RECQl4A)


Gene families : OG_01_0010895 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010895_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d015212_T006
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d015212_T006
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_298
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_133


Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding ISM GOs from InterProScan
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0004386 helicase activity ISM GOs from InterProScan
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0006260 DNA replication ISM GOs from InterProScan
BP GO:0006281 DNA repair ISM GOs from InterProScan
BP GO:0006310 DNA recombination ISM GOs from InterProScan
MF GO:0043138 3'-5' DNA helicase activity ISM GOs from InterProScan
BP GO:0044237 cellular metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR027417 P-loop_NTPase Gene3D 633 847
IPR014001 Helicase_ATP-bd ProSiteProfiles 452 625
IPR001763 Rhodanese-like_dom ProSiteProfiles 665 707
IPR011545 DEAD/DEAH_box_helicase_dom Pfam 445 612
IPR018982 RQC_domain SMART 853 964
IPR014001 Helicase_ATP-bd SMART 440 641
IPR044876 HRDC_dom_sf Gene3D 990 1076
IPR002121 HRDC_dom ProSiteProfiles 994 1076
IPR002121 HRDC_dom SMART 994 1076
IPR001650 Helicase_C SMART 675 756
IPR018982 RQC_domain Pfam 851 967
IPR002121 HRDC_dom Pfam 999 1066
IPR001650 Helicase_C Pfam 653 756
IPR032284 RecQ_Zn-bd Pfam 767 844
IPR002464 DNA/RNA_helicase_DEAH_CS ProSitePatterns 564 573
IPR027417 P-loop_NTPase Gene3D 407 632
IPR004589 DNA_helicase_ATP-dep_RecQ NCBIfam 436 904
IPR036388 WH-like_DNA-bd_sf Gene3D 851 962
IPR036390 WH_DNA-bd_sf SUPERFAMILY 851 962
IPR001650 Helicase_C ProSiteProfiles 639 799
IPR010997 HRDC-like_sf SUPERFAMILY 999 1073
IPR027417 P-loop_NTPase SUPERFAMILY 484 776
IPR001650 Helicase_C Pfam 655 755
IPR004589 DNA_helicase_ATP-dep_RecQ TIGRFAM 436 904
IPR032284 RecQ_Zn-bd Pfam 767 844
IPR014001 Helicase_ATP-bd ProSiteProfiles 452 625
IPR002121 HRDC_dom ProSiteProfiles 994 1076
IPR002121 HRDC_dom Pfam 999 1066
IPR036388 WH-like_DNA-bd_sf Gene3D 851 962
IPR044876 HRDC_dom_sf Gene3D 990 1076
IPR001650 Helicase_C ProSiteProfiles 639 799
IPR036390 WH_DNA-bd_sf SUPERFAMILY 851 962
IPR014001 Helicase_ATP-bd SMART 440 641
IPR011545 DEAD/DEAH_box_helicase_dom Pfam 446 612
IPR027417 P-loop_NTPase Gene3D 633 847
IPR002121 HRDC_dom SMART 994 1076
IPR001763 Rhodanese-like_dom ProSiteProfiles 665 707
IPR018982 RQC_domain SMART 853 964
IPR027417 P-loop_NTPase SUPERFAMILY 484 776
IPR027417 P-loop_NTPase Gene3D 407 632
IPR010997 HRDC-like_sf SUPERFAMILY 999 1073
IPR018982 RQC_domain Pfam 851 967
IPR001650 Helicase_C SMART 675 756
IPR002464 DNA/RNA_helicase_DEAH_CS ProSitePatterns 564 573

No CAZYmes available for this sequence

No external refs found!