Zm00001d015566_T003

Description : zinc finger (C3HC4-type RING finger) family protein

Gene families : OG_01_0013640 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013640_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d015566_T003
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d015566_T003
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_210
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_213

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR013083	Znf_RING/FYVE/PHD	Gene3D	145	208
IPR001607	Znf_UBP	Pfam	219	278
IPR001841	Znf_RING	Pfam	167	208
IPR011422	BRAP2/ETP1_RRM	Pfam	60	155
IPR001841	Znf_RING	ProSiteProfiles	168	208
IPR047243	RING-H2_BRAP2	CDD	166	209
IPR013083	Znf_RING/FYVE/PHD	Gene3D	209	289
IPR001607	Znf_UBP	SMART	218	267
IPR001607	Znf_UBP	ProSiteProfiles	202	295
IPR001841	Znf_RING	SMART	168	207
IPR001607	Znf_UBP	Pfam	219	278
IPR001841	Znf_RING	ProSiteProfiles	168	208
IPR011422	BRAP2/ETP1_RRM	Pfam	60	155
IPR013083	Znf_RING/FYVE/PHD	Gene3D	209	289
IPR001841	Znf_RING	Pfam	167	208
IPR001607	Znf_UBP	ProSiteProfiles	217	278
IPR013083	Znf_RING/FYVE/PHD	Gene3D	145	208
IPR001841	Znf_RING	SMART	168	207
IPR001607	Znf_UBP	SMART	218	267

No CAZYmes available for this sequence

External Links

No external refs found!