1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d015820_T002

Zm00001d015820_T002


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0018277 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018277_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d015820_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d015820_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_321
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_284


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000743 Glyco_hydro_28 Pfam 66 135
IPR000743 Glyco_hydro_28 Pfam 2 54
IPR012334 Pectin_lyas_fold Gene3D 1 146
IPR000743 Glyco_hydro_28 ProSitePatterns 6 19
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 2 147
IPR012334 Pectin_lyas_fold Gene3D 1 146
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 2 147
IPR000743 Glyco_hydro_28 Pfam 2 54
IPR000743 Glyco_hydro_28 Pfam 67 135
IPR000743 Glyco_hydro_28 ProSitePatterns 6 19
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 149 8.7e-26 2 135
No external refs found!