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  5. Zm00001d015952_T001

Zm00001d015952_T001


Description : Protein with RING/U-box and TRAF-like domains


Gene families : OG_01_0000708 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000708_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d015952_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d015952_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_185
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_246


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005737 cytoplasm ISM GOs from InterProScan
BP GO:0006511 ubiquitin-dependent protein catabolic process ISM GOs from InterProScan
BP GO:0007275 multicellular organism development ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001841 Znf_RING ProSiteProfiles 79 115
IPR049548 Sina-like_RING Pfam 79 114
IPR018121 7-in-absentia-prot_TRAF-dom Pfam 223 320
IPR013083 Znf_RING/FYVE/PHD Gene3D 127 184
IPR013010 Znf_SIAH ProSiteProfiles 132 192
IPR013083 Znf_RING/FYVE/PHD Gene3D 73 121
IPR008974 TRAF-like Gene3D 185 320
IPR013010 Znf_SIAH ProSiteProfiles 132 192
IPR018121 7-in-absentia-prot_TRAF-dom Pfam 121 320
IPR013083 Znf_RING/FYVE/PHD Gene3D 73 121
IPR008974 TRAF-like Gene3D 185 320
IPR001841 Znf_RING ProSiteProfiles 79 115
IPR013083 Znf_RING/FYVE/PHD Gene3D 127 184

No CAZYmes available for this sequence

No external refs found!