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Description : HMG (high mobility group) box protein
Gene families : OG_01_0015441 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015441_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d016082_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d016082_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_94 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_59 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003677 | DNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR036910 | HMG_box_dom_sf | SUPERFAMILY | 153 | 227 |
| IPR036910 | HMG_box_dom_sf | SUPERFAMILY | 275 | 359 |
| IPR009071 | HMG_box_dom | Pfam | 412 | 479 |
| IPR009071 | HMG_box_dom | Pfam | 287 | 353 |
| IPR009071 | HMG_box_dom | Pfam | 166 | 227 |
| IPR036910 | HMG_box_dom_sf | SUPERFAMILY | 408 | 482 |
| IPR009071 | HMG_box_dom | ProSiteProfiles | 412 | 480 |
| IPR009071 | HMG_box_dom | ProSiteProfiles | 165 | 233 |
| IPR036910 | HMG_box_dom_sf | Gene3D | 270 | 367 |
| IPR036910 | HMG_box_dom_sf | Gene3D | 392 | 487 |
| IPR036910 | HMG_box_dom_sf | Gene3D | 150 | 231 |
| IPR009071 | HMG_box_dom | SMART | 411 | 481 |
| IPR009071 | HMG_box_dom | SMART | 286 | 354 |
| IPR009071 | HMG_box_dom | SMART | 164 | 234 |
| IPR044601 | HMGB6/HMGB13 | PANTHER | 1 | 485 |
| IPR009071 | HMG_box_dom | ProSiteProfiles | 287 | 353 |
| IPR009071 | HMG_box_dom | ProSiteProfiles | 287 | 353 |
| IPR009071 | HMG_box_dom | ProSiteProfiles | 165 | 233 |
| IPR036910 | HMG_box_dom_sf | Gene3D | 270 | 367 |
| IPR036910 | HMG_box_dom_sf | Gene3D | 392 | 487 |
| IPR036910 | HMG_box_dom_sf | Gene3D | 150 | 231 |
| IPR044601 | HMGB6/HMGB13 | PANTHER | 5 | 485 |
| IPR036910 | HMG_box_dom_sf | SUPERFAMILY | 408 | 482 |
| IPR036910 | HMG_box_dom_sf | SUPERFAMILY | 153 | 227 |
| IPR009071 | HMG_box_dom | Pfam | 287 | 353 |
| IPR009071 | HMG_box_dom | Pfam | 412 | 479 |
| IPR009071 | HMG_box_dom | Pfam | 166 | 227 |
| IPR036910 | HMG_box_dom_sf | SUPERFAMILY | 275 | 359 |
| IPR009071 | HMG_box_dom | ProSiteProfiles | 412 | 480 |
| IPR009071 | HMG_box_dom | SMART | 411 | 481 |
| IPR009071 | HMG_box_dom | SMART | 164 | 234 |
| IPR009071 | HMG_box_dom | SMART | 286 | 354 |
No CAZYmes available for this sequence
| No external refs found! |