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  5. Zm00001d016347_T002

Zm00001d016347_T002


Description : Calcium-binding EF hand family protein


Gene families : OG_01_0002248 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002248_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d016347_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d016347_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_252
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_264


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 280 292
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 241 253
IPR002048 EF_hand_dom Pfam 275 294
IPR002048 EF_hand_dom ProSiteProfiles 353 388
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 366 378
IPR002048 EF_hand_dom ProSiteProfiles 314 349
IPR002048 EF_hand_dom ProSiteProfiles 280 302
IPR002048 EF_hand_dom Pfam 319 380
IPR002048 EF_hand_dom ProSiteProfiles 234 263
IPR002048 EF_hand_dom Pfam 237 257
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 327 339
IPR011992 EF-hand-dom_pair SUPERFAMILY 155 261
IPR002048 EF_hand_dom SMART 232 260
IPR002048 EF_hand_dom SMART 357 389
IPR002048 EF_hand_dom SMART 318 346
IPR002048 EF_hand_dom SMART 271 299
IPR011992 EF-hand-dom_pair SUPERFAMILY 234 385
IPR002048 EF_hand_dom ProSiteProfiles 234 263
IPR002048 EF_hand_dom ProSiteProfiles 314 349
IPR002048 EF_hand_dom ProSiteProfiles 353 388
IPR002048 EF_hand_dom SMART 232 260
IPR002048 EF_hand_dom SMART 357 389
IPR002048 EF_hand_dom SMART 318 346
IPR002048 EF_hand_dom SMART 271 299
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 366 378
IPR002048 EF_hand_dom Pfam 236 256
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 241 253
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 280 292
IPR002048 EF_hand_dom Pfam 320 380
IPR011992 EF-hand-dom_pair SUPERFAMILY 155 261
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 327 339
IPR002048 EF_hand_dom ProSiteProfiles 280 302
IPR011992 EF-hand-dom_pair SUPERFAMILY 234 385

No CAZYmes available for this sequence

No external refs found!