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  5. Zm00001d016456_T003

Zm00001d016456_T003


Description : HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain


Gene families : OG_01_0007215 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007215_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d016456_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d016456_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_223
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_105


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001606 ARID_dom ProSiteProfiles 64 155
IPR036431 ARID_dom_sf Gene3D 53 173
IPR001606 ARID_dom Pfam 68 151
IPR045303 ARID_HMGB9-like CDD 66 151
IPR009071 HMG_box_dom Pfam 276 343
IPR036910 HMG_box_dom_sf SUPERFAMILY 264 351
IPR009071 HMG_box_dom ProSiteProfiles 276 343
IPR036910 HMG_box_dom_sf Gene3D 259 351
IPR009071 HMG_box_dom SMART 275 344
IPR001606 ARID_dom SMART 65 156
IPR036431 ARID_dom_sf SUPERFAMILY 61 163
IPR036910 HMG_box_dom_sf SUPERFAMILY 264 351
IPR009071 HMG_box_dom ProSiteProfiles 276 343
IPR009071 HMG_box_dom Pfam 276 343
IPR036910 HMG_box_dom_sf Gene3D 259 351
IPR001606 ARID_dom SMART 65 156
IPR001606 ARID_dom Pfam 68 151
IPR036431 ARID_dom_sf SUPERFAMILY 61 163
IPR009071 HMG_box_dom SMART 275 344
IPR001606 ARID_dom ProSiteProfiles 64 155
IPR045303 ARID_HMGB9-like CDD 66 151
IPR036431 ARID_dom_sf Gene3D 53 173

No CAZYmes available for this sequence

No external refs found!