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  5. Zm00001d016473_T001

Zm00001d016473_T001


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0016344 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0016344_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d016473_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d016473_T001 No neighbors in network
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_5


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 455 490
IPR046848 E_motif Pfam 549 599
IPR002885 Pentatricopeptide_rpt Pfam 117 163
IPR002885 Pentatricopeptide_rpt Pfam 319 362
IPR002885 Pentatricopeptide_rpt Pfam 420 467
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 218 252
IPR002885 Pentatricopeptide_rpt Pfam 294 318
IPR002885 Pentatricopeptide_rpt Pfam 393 415
IPR002885 Pentatricopeptide_rpt Pfam 220 247
IPR002885 Pentatricopeptide_rpt Pfam 88 109
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 116 150
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 319 353
IPR002885 Pentatricopeptide_rpt NCBIfam 321 354
IPR002885 Pentatricopeptide_rpt NCBIfam 423 456
IPR002885 Pentatricopeptide_rpt NCBIfam 495 518
IPR002885 Pentatricopeptide_rpt NCBIfam 220 248
IPR002885 Pentatricopeptide_rpt NCBIfam 458 491
IPR002885 Pentatricopeptide_rpt NCBIfam 118 151
IPR002885 Pentatricopeptide_rpt Pfam 487 518
IPR011990 TPR-like_helical_dom_sf Gene3D 169 281
IPR011990 TPR-like_helical_dom_sf Gene3D 11 168
IPR011990 TPR-like_helical_dom_sf Gene3D 374 597
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 420 454
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 268 418
IPR002885 Pentatricopeptide_rpt Pfam 294 318
IPR002885 Pentatricopeptide_rpt Pfam 220 247
IPR002885 Pentatricopeptide_rpt Pfam 88 109
IPR002885 Pentatricopeptide_rpt Pfam 393 415
IPR002885 Pentatricopeptide_rpt Pfam 321 348
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 319 353
IPR002885 Pentatricopeptide_rpt Pfam 117 163
IPR002885 Pentatricopeptide_rpt Pfam 420 466
IPR002885 Pentatricopeptide_rpt Pfam 487 518
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 218 252
IPR002885 Pentatricopeptide_rpt TIGRFAM 458 491
IPR002885 Pentatricopeptide_rpt TIGRFAM 423 456
IPR002885 Pentatricopeptide_rpt TIGRFAM 118 151
IPR002885 Pentatricopeptide_rpt TIGRFAM 495 518
IPR002885 Pentatricopeptide_rpt TIGRFAM 321 354
IPR002885 Pentatricopeptide_rpt TIGRFAM 220 248
IPR011990 TPR-like_helical_dom_sf Gene3D 169 281
IPR011990 TPR-like_helical_dom_sf Gene3D 11 168
IPR011990 TPR-like_helical_dom_sf Gene3D 374 597
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 455 490
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 116 150
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 268 418
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 420 454

No CAZYmes available for this sequence

No external refs found!