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  5. Zm00001d016794_T001

Zm00001d016794_T001


Description : ABC transporter family protein


Gene families : OG_01_0001150 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001150_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d016794_T001 No neighbors in network
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d016794_T001
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_22


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
MF GO:0140359 ABC-type transporter activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR003593 AAA+_ATPase SMART 1038 1230
IPR003593 AAA+_ATPase SMART 387 582
IPR011527 ABC1_TM_dom Pfam 694 957
IPR011527 ABC1_TM_dom Pfam 37 307
IPR003439 ABC_transporter-like_ATP-bd Pfam 1030 1178
IPR017871 ABC_transporter-like_CS ProSitePatterns 1150 1164
IPR003439 ABC_transporter-like_ATP-bd Pfam 380 536
IPR027417 P-loop_NTPase SUPERFAMILY 1003 1250
IPR036640 ABC1_TM_sf SUPERFAMILY 34 344
IPR036640 ABC1_TM_sf Gene3D 23 613
IPR027417 P-loop_NTPase Gene3D 350 607
IPR011527 ABC1_TM_dom ProSiteProfiles 37 325
IPR027417 P-loop_NTPase SUPERFAMILY 353 606
IPR027417 P-loop_NTPase Gene3D 1009 1251
IPR036640 ABC1_TM_sf Gene3D 979 1008
IPR036640 ABC1_TM_sf SUPERFAMILY 676 995
IPR036640 ABC1_TM_sf Gene3D 670 978
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 360 605
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 1011 1247
IPR039421 Type_1_exporter PANTHER 13 633
IPR011527 ABC1_TM_dom ProSiteProfiles 689 976
IPR017871 ABC_transporter-like_CS ProSitePatterns 508 522
IPR003593 AAA+_ATPase SMART 1038 1230
IPR003593 AAA+_ATPase SMART 387 582
IPR036640 ABC1_TM_sf SUPERFAMILY 34 344
IPR011527 ABC1_TM_dom ProSiteProfiles 37 325
IPR017871 ABC_transporter-like_CS ProSitePatterns 1150 1164
IPR027417 P-loop_NTPase SUPERFAMILY 1003 1250
IPR011527 ABC1_TM_dom Pfam 694 957
IPR011527 ABC1_TM_dom Pfam 37 307
IPR036640 ABC1_TM_sf Gene3D 979 1008
IPR027417 P-loop_NTPase Gene3D 350 607
IPR003439 ABC_transporter-like_ATP-bd Pfam 380 536
IPR027417 P-loop_NTPase Gene3D 1009 1251
IPR017871 ABC_transporter-like_CS ProSitePatterns 508 522
IPR011527 ABC1_TM_dom ProSiteProfiles 689 976
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 1011 1247
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 360 605
IPR036640 ABC1_TM_sf SUPERFAMILY 676 995
IPR003439 ABC_transporter-like_ATP-bd Pfam 1031 1178
IPR036640 ABC1_TM_sf Gene3D 23 613
IPR027417 P-loop_NTPase SUPERFAMILY 353 606
IPR039421 Type_1_exporter PANTHER 17 1253
IPR036640 ABC1_TM_sf Gene3D 670 978

No CAZYmes available for this sequence

No external refs found!