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  5. Zm00001d016836_T002

Zm00001d016836_T002


Description : Zinc finger C-x8-C-x5-C-x3-H type family protein


Gene families : OG_01_0009608 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0009608_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d016836_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d016836_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_205
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_133


Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome ISM GOs from InterProScan
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0046872 metal ion binding ISM GOs from InterProScan
CC GO:0089701 U2AF complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR009145 U2AF_small PANTHER 72 547
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 255 354
IPR003954 RRM_dom_euk SMART 278 352
IPR000571 Znf_CCCH ProSiteProfiles 358 388
IPR000571 Znf_CCCH ProSiteProfiles 224 252
IPR000504 RRM_dom ProSiteProfiles 256 356
IPR000571 Znf_CCCH Pfam 230 249
IPR009145 U2AF_small PRINTS 285 300
IPR009145 U2AF_small PRINTS 230 249
IPR009145 U2AF_small PRINTS 249 269
IPR009145 U2AF_small PRINTS 378 390
IPR009145 U2AF_small PRINTS 340 364
IPR009145 U2AF_small PRINTS 313 335
IPR000504 RRM_dom SMART 257 352
IPR000571 Znf_CCCH SMART 358 387
IPR000571 Znf_CCCH SMART 225 251
IPR000504 RRM_dom Pfam 293 349
IPR035979 RBD_domain_sf SUPERFAMILY 287 355
IPR000504 RRM_dom Pfam 293 349
IPR000571 Znf_CCCH SMART 358 387
IPR000571 Znf_CCCH SMART 225 251
IPR000571 Znf_CCCH ProSiteProfiles 358 388
IPR003954 RRM_dom_euk SMART 278 352
IPR035979 RBD_domain_sf SUPERFAMILY 287 355
IPR009145 U2AF_small PANTHER 24 749
IPR009145 U2AF_small PRINTS 285 300
IPR009145 U2AF_small PRINTS 230 249
IPR009145 U2AF_small PRINTS 249 269
IPR009145 U2AF_small PRINTS 378 390
IPR009145 U2AF_small PRINTS 340 364
IPR009145 U2AF_small PRINTS 313 335
IPR000504 RRM_dom SMART 257 352
IPR000504 RRM_dom ProSiteProfiles 256 356
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 255 354
IPR000571 Znf_CCCH ProSiteProfiles 224 252
IPR000571 Znf_CCCH Pfam 359 386
IPR000571 Znf_CCCH Pfam 230 249

No CAZYmes available for this sequence

No external refs found!