Zm00001d017216_T001

Description : polyribonucleotide nucleotidyltransferase, putative

Gene families : OG_01_0005316 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005316_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d017216_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d017216_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_263

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004654	polyribonucleotide nucleotidyltransferase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR027408	PNPase/RNase_PH_dom_sf	Gene3D	297	623
IPR015848	PNPase_PH_RNA-bd_bac/org-type	Pfam	304	382
IPR015847	ExoRNase_PH_dom2	Pfam	207	270
IPR003029	S1_domain	ProSiteProfiles	687	755
IPR012162	PNPase	NCBIfam	71	756
IPR036456	PNPase_PH_RNA-bd_sf	SUPERFAMILY	286	388
IPR012340	NA-bd_OB-fold	SUPERFAMILY	916	978
IPR012162	PNPase	PANTHER	53	804
IPR001247	ExoRNase_PH_dom1	Pfam	73	204
IPR001247	ExoRNase_PH_dom1	Pfam	385	518
IPR027408	PNPase/RNase_PH_dom_sf	Gene3D	62	296
IPR036345	ExoRNase_PH_dom2_sf	SUPERFAMILY	512	613
IPR020568	Ribosomal_Su5_D2-typ_SF	SUPERFAMILY	363	561
IPR012340	NA-bd_OB-fold	Gene3D	684	757
IPR036345	ExoRNase_PH_dom2_sf	SUPERFAMILY	198	291
IPR003029	S1_domain	Pfam	684	755
IPR012162	PNPase	Hamap	63	758
IPR020568	Ribosomal_Su5_D2-typ_SF	SUPERFAMILY	63	204
IPR003029	S1_domain	SMART	685	755
IPR003029	S1_domain	SMART	916	979
IPR012340	NA-bd_OB-fold	SUPERFAMILY	674	759
IPR001247	ExoRNase_PH_dom1	Pfam	74	204
IPR001247	ExoRNase_PH_dom1	Pfam	385	518
IPR020568	Ribosomal_Su5_D2-typ_SF	SUPERFAMILY	63	204
IPR015848	PNPase_PH_RNA-bd_bac/org-type	Pfam	304	382
IPR012162	PNPase	TIGRFAM	71	756
IPR012340	NA-bd_OB-fold	SUPERFAMILY	674	759
IPR027408	PNPase/RNase_PH_dom_sf	Gene3D	297	623
IPR003029	S1_domain	Pfam	684	755
IPR027408	PNPase/RNase_PH_dom_sf	Gene3D	62	296
IPR015847	ExoRNase_PH_dom2	Pfam	207	270
IPR012162	PNPase	PANTHER	55	830
IPR012340	NA-bd_OB-fold	SUPERFAMILY	916	978
IPR012162	PNPase	Hamap	63	758
IPR020568	Ribosomal_Su5_D2-typ_SF	SUPERFAMILY	363	561
IPR036345	ExoRNase_PH_dom2_sf	SUPERFAMILY	512	613
IPR036456	PNPase_PH_RNA-bd_sf	SUPERFAMILY	286	388
IPR036345	ExoRNase_PH_dom2_sf	SUPERFAMILY	198	291
IPR003029	S1_domain	ProSiteProfiles	687	755

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d017216_T001

Expression Profile

Co-expression Networks

Functional Annotation