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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0017846 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017846_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d017250_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d017250_T001 | No neighbors in network |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_165 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 214 | 262 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 318 | 363 |
| IPR046848 | E_motif | Pfam | 433 | 496 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 285 | 504 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 158 | 183 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 289 | 313 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 390 | 415 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 184 | 212 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 3 | 145 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 146 | 271 |
| IPR045215 | PPR_prot_At1g15510 | PANTHER | 12 | 211 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 197 | 475 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 316 | 350 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 186 | 216 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 218 | 251 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 319 | 352 |
| IPR002885 | Pentatricopeptide_rpt | NCBIfam | 353 | 386 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 184 | 218 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 316 | 350 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 184 | 218 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 184 | 212 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 3 | 145 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 146 | 271 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 318 | 362 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 215 | 261 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 390 | 415 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 158 | 183 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 289 | 313 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 285 | 504 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 218 | 251 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 319 | 352 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 353 | 386 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 186 | 216 |
| IPR011990 | TPR-like_helical_dom_sf | SUPERFAMILY | 197 | 475 |
No CAZYmes available for this sequence
| No external refs found! |