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  5. Zm00001d017514_T002

Zm00001d017514_T002


Description : WD-40 repeat family protein / beige-related


Gene families : OG_01_0002385 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002385_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d017514_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d017514_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_5
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_195


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000409 BEACH_dom SMART 2143 2389
IPR023362 PH-BEACH_dom Pfam 2017 2115
IPR011993 PH-like_dom_sf Gene3D 2008 2114
IPR023362 PH-BEACH_dom ProSiteProfiles 2005 2116
IPR001680 WD40_rpt ProSiteProfiles 2568 2602
IPR001680 WD40_rpt Pfam 2569 2599
IPR036372 BEACH_dom_sf Gene3D 2134 2389
IPR001680 WD40_rpt SMART 2649 2688
IPR001680 WD40_rpt SMART 2841 2881
IPR001680 WD40_rpt SMART 2561 2600
IPR036372 BEACH_dom_sf SUPERFAMILY 2122 2389
IPR031570 NBEA/BDCP_DUF4704 Pfam 1038 1177
IPR031570 NBEA/BDCP_DUF4704 Pfam 564 871
IPR023362 PH-BEACH_dom CDD 2008 2116
IPR000409 BEACH_dom Pfam 2150 2389
IPR000409 BEACH_dom CDD 2151 2389
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 2549 2880
IPR000409 BEACH_dom ProSiteProfiles 2108 2389
IPR013320 ConA-like_dom_sf SUPERFAMILY 273 500
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 2540 2827
IPR023362 PH-BEACH_dom Pfam 2018 2116
IPR036372 BEACH_dom_sf Gene3D 2134 2389
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 2540 2827
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 2549 2880
IPR001680 WD40_rpt ProSiteProfiles 2568 2602
IPR000409 BEACH_dom CDD 2151 2389
IPR011993 PH-like_dom_sf Gene3D 2008 2114
IPR023362 PH-BEACH_dom CDD 2008 2116
IPR000409 BEACH_dom ProSiteProfiles 2108 2389
IPR036372 BEACH_dom_sf SUPERFAMILY 2122 2389
IPR001680 WD40_rpt SMART 2649 2688
IPR001680 WD40_rpt SMART 2841 2881
IPR001680 WD40_rpt SMART 2561 2600
IPR000409 BEACH_dom SMART 2143 2389
IPR000409 BEACH_dom Pfam 2150 2389
IPR023362 PH-BEACH_dom ProSiteProfiles 2005 2116
IPR031570 NBEA/BDCP_DUF4704 Pfam 570 850
IPR001680 WD40_rpt Pfam 2570 2599
IPR013320 ConA-like_dom_sf SUPERFAMILY 273 500

No CAZYmes available for this sequence

No external refs found!