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  5. Zm00001d017641_T004

Zm00001d017641_T004


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG_01_0011081 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011081_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d017641_T004
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d017641_T004
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_96
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_135


Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR017455 Znf_FYVE-rel ProSiteProfiles 516 578
IPR011011 Znf_FYVE_PHD SUPERFAMILY 518 583
IPR000408 Reg_chr_condens Pfam 187 236
IPR000408 Reg_chr_condens Pfam 357 405
IPR000408 Reg_chr_condens Pfam 460 509
IPR000408 Reg_chr_condens Pfam 239 291
IPR000408 Reg_chr_condens Pfam 409 457
IPR000408 Reg_chr_condens Pfam 295 343
IPR009091 RCC1/BLIP-II SUPERFAMILY 167 513
IPR013083 Znf_RING/FYVE/PHD Gene3D 524 585
IPR009091 RCC1/BLIP-II Gene3D 134 353
IPR000306 Znf_FYVE Pfam 518 578
IPR011993 PH-like_dom_sf Gene3D 16 131
IPR000408 Reg_chr_condens ProSiteProfiles 357 408
IPR000408 Reg_chr_condens ProSitePatterns 333 343
IPR000408 Reg_chr_condens ProSiteProfiles 295 346
IPR000408 Reg_chr_condens ProSiteProfiles 240 294
IPR001849 PH_domain Pfam 18 126
IPR000408 Reg_chr_condens PRINTS 190 206
IPR000408 Reg_chr_condens PRINTS 281 297
IPR000408 Reg_chr_condens PRINTS 297 311
IPR000408 Reg_chr_condens PRINTS 456 477
IPR000408 Reg_chr_condens ProSiteProfiles 188 239
IPR007110 Ig-like_dom ProSiteProfiles 152 237
IPR013591 Brevis_radix_dom Pfam 798 850
IPR000306 Znf_FYVE SMART 511 579
IPR009091 RCC1/BLIP-II Gene3D 354 523
IPR000408 Reg_chr_condens ProSiteProfiles 409 460
IPR000408 Reg_chr_condens ProSiteProfiles 461 512
IPR013591 Brevis_radix_dom ProSiteProfiles 796 851
IPR009091 RCC1/BLIP-II Gene3D 354 523
IPR000306 Znf_FYVE SMART 511 579
IPR000408 Reg_chr_condens Pfam 295 343
IPR000408 Reg_chr_condens Pfam 460 509
IPR000408 Reg_chr_condens Pfam 357 405
IPR000408 Reg_chr_condens Pfam 239 290
IPR000408 Reg_chr_condens Pfam 409 457
IPR000408 Reg_chr_condens Pfam 188 236
IPR013591 Brevis_radix_dom ProSiteProfiles 796 851
IPR000408 Reg_chr_condens ProSiteProfiles 461 512
IPR000408 Reg_chr_condens ProSiteProfiles 409 460
IPR001849 PH_domain Pfam 18 126
IPR000408 Reg_chr_condens PRINTS 190 206
IPR000408 Reg_chr_condens PRINTS 281 297
IPR000408 Reg_chr_condens PRINTS 297 311
IPR000408 Reg_chr_condens PRINTS 456 477
IPR000408 Reg_chr_condens ProSiteProfiles 357 408
IPR007110 Ig-like_dom ProSiteProfiles 152 237
IPR017455 Znf_FYVE-rel ProSiteProfiles 516 578
IPR000408 Reg_chr_condens ProSitePatterns 333 343
IPR000306 Znf_FYVE Pfam 518 578
IPR000408 Reg_chr_condens ProSiteProfiles 295 346
IPR013591 Brevis_radix_dom Pfam 798 850
IPR009091 RCC1/BLIP-II Gene3D 134 353
IPR013083 Znf_RING/FYVE/PHD Gene3D 524 585
IPR000408 Reg_chr_condens ProSiteProfiles 188 239
IPR009091 RCC1/BLIP-II SUPERFAMILY 167 513
IPR000408 Reg_chr_condens ProSiteProfiles 240 294
IPR011011 Znf_FYVE_PHD SUPERFAMILY 518 583
IPR011993 PH-like_dom_sf Gene3D 16 131

No CAZYmes available for this sequence

No external refs found!