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  5. Zm00001d017720_T009

Zm00001d017720_T009


Description : topoisomerase II


Gene families : OG_01_0012499 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012499_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d017720_T009
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d017720_T009
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_94
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_24


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISM GOs from InterProScan
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity ISM GOs from InterProScan
MF GO:0005524 ATP binding ISM GOs from InterProScan
BP GO:0006259 DNA metabolic process ISM GOs from InterProScan
BP GO:0006265 DNA topological change ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR006171 TOPRIM_domain Pfam 447 546
IPR002205 Topo_IIA_dom_A CDD 690 1153
IPR034157 TOPRIM_TopoII CDD 446 564
IPR001241 Topo_IIA SMART 71 660
IPR013758 Topo_IIA_A/C_ab Gene3D 693 996
IPR020568 Ribosomal_Su5_D2-typ_SF SUPERFAMILY 250 408
IPR003594 HATPase_C Pfam 71 166
IPR002205 Topo_IIA_dom_A Pfam 691 1150
IPR013760 Topo_IIA-like_dom_sf SUPERFAMILY 422 1159
IPR006171 TOPRIM_domain ProSiteProfiles 446 560
IPR013757 Topo_IIA_A_a_sf Gene3D 999 1167
IPR014721 Ribsml_uS5_D2-typ_fold_subgr Gene3D 281 403
IPR013506 Topo_IIA_bsu_dom2 Pfam 262 413
IPR018522 TopoIIA_CS ProSitePatterns 450 458
IPR001154 TopoII_euk PRINTS 991 1017
IPR001154 TopoII_euk PRINTS 558 569
IPR001154 TopoII_euk PRINTS 537 552
IPR001154 TopoII_euk PRINTS 431 441
IPR001154 TopoII_euk PRINTS 719 742
IPR001154 TopoII_euk PRINTS 446 453
IPR001154 TopoII_euk PRINTS 606 618
IPR001154 TopoII_euk PRINTS 796 816
IPR001154 TopoII_euk PRINTS 906 920
IPR001154 TopoII_euk PRINTS 494 507
IPR001154 TopoII_euk PRINTS 766 788
IPR036890 HATPase_C_sf SUPERFAMILY 22 257
IPR013759 Topo_IIA_B_C Gene3D 432 692
IPR036890 HATPase_C_sf Gene3D 29 271
IPR031660 TOPRIM_C Pfam 562 688
IPR002205 Topo_IIA_dom_A SMART 671 1148
IPR003594 HATPase_C Pfam 69 216
IPR006171 TOPRIM_domain Pfam 448 546
IPR018522 TopoIIA_CS ProSitePatterns 450 458
IPR002205 Topo_IIA_dom_A Pfam 691 1151
IPR031660 TOPRIM_C Pfam 562 688
IPR001241 Topo_IIA SMART 71 660
IPR036890 HATPase_C_sf SUPERFAMILY 22 257
IPR013759 Topo_IIA_B_C Gene3D 432 692
IPR013760 Topo_IIA-like_dom_sf SUPERFAMILY 422 1159
IPR013757 Topo_IIA_A_a_sf Gene3D 999 1167
IPR006171 TOPRIM_domain ProSiteProfiles 446 560
IPR014721 Ribsml_uS5_D2-typ_fold_subgr Gene3D 281 403
IPR001154 TopoII_euk PRINTS 991 1017
IPR001154 TopoII_euk PRINTS 558 569
IPR001154 TopoII_euk PRINTS 537 552
IPR001154 TopoII_euk PRINTS 431 441
IPR001154 TopoII_euk PRINTS 719 742
IPR001154 TopoII_euk PRINTS 446 453
IPR001154 TopoII_euk PRINTS 606 618
IPR001154 TopoII_euk PRINTS 796 816
IPR001154 TopoII_euk PRINTS 906 920
IPR001154 TopoII_euk PRINTS 494 507
IPR001154 TopoII_euk PRINTS 766 788
IPR034157 TOPRIM_TopoII CDD 446 564
IPR036890 HATPase_C_sf Gene3D 29 271
IPR002205 Topo_IIA_dom_A SMART 671 1148
IPR013758 Topo_IIA_A/C_ab Gene3D 693 996
IPR020568 Ribosomal_Su5_D2-typ_SF SUPERFAMILY 250 408
IPR002205 Topo_IIA_dom_A CDD 690 1153
IPR013506 Topo_IIA_bsu_dom2 Pfam 262 412

No CAZYmes available for this sequence

No external refs found!