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  5. Zm00001d018019_T001

Zm00001d018019_T001


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_01_0013454 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013454_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d018019_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d018019_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_277
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_252


Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
BP GO:0009451 RNA modification ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 438 472
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 71 105
IPR045215 PPR_prot_At1g15510 PANTHER 370 638
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 337 371
IPR011990 TPR-like_helical_dom_sf Gene3D 30 161
IPR011990 TPR-like_helical_dom_sf Gene3D 398 490
IPR002885 Pentatricopeptide_rpt NCBIfam 73 101
IPR002885 Pentatricopeptide_rpt NCBIfam 513 536
IPR002885 Pentatricopeptide_rpt NCBIfam 238 271
IPR002885 Pentatricopeptide_rpt NCBIfam 339 372
IPR002885 Pentatricopeptide_rpt NCBIfam 475 508
IPR002885 Pentatricopeptide_rpt NCBIfam 412 435
IPR002885 Pentatricopeptide_rpt NCBIfam 440 473
IPR002885 Pentatricopeptide_rpt NCBIfam 207 237
IPR011990 TPR-like_helical_dom_sf Gene3D 162 235
IPR046848 E_motif Pfam 557 617
IPR011990 TPR-like_helical_dom_sf Gene3D 248 397
IPR011990 TPR-like_helical_dom_sf Gene3D 501 635
IPR032867 DYW_dom Pfam 653 745
IPR002885 Pentatricopeptide_rpt Pfam 238 268
IPR002885 Pentatricopeptide_rpt Pfam 412 435
IPR002885 Pentatricopeptide_rpt Pfam 73 100
IPR002885 Pentatricopeptide_rpt Pfam 512 537
IPR002885 Pentatricopeptide_rpt Pfam 438 485
IPR002885 Pentatricopeptide_rpt Pfam 204 237
IPR002885 Pentatricopeptide_rpt Pfam 336 385
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 205 239
IPR002885 Pentatricopeptide_rpt Pfam 238 268
IPR002885 Pentatricopeptide_rpt Pfam 412 435
IPR002885 Pentatricopeptide_rpt Pfam 512 537
IPR002885 Pentatricopeptide_rpt Pfam 73 100
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 205 239
IPR032867 DYW_dom Pfam 611 734
IPR011990 TPR-like_helical_dom_sf Gene3D 501 635
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 337 371
IPR011990 TPR-like_helical_dom_sf Gene3D 248 397
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 438 472
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 71 105
IPR002885 Pentatricopeptide_rpt Pfam 204 237
IPR002885 Pentatricopeptide_rpt Pfam 336 385
IPR002885 Pentatricopeptide_rpt Pfam 438 485
IPR045215 PPR_prot_At1g15510 PANTHER 8 728
IPR002885 Pentatricopeptide_rpt TIGRFAM 238 271
IPR002885 Pentatricopeptide_rpt TIGRFAM 207 237
IPR002885 Pentatricopeptide_rpt TIGRFAM 440 473
IPR002885 Pentatricopeptide_rpt TIGRFAM 513 536
IPR002885 Pentatricopeptide_rpt TIGRFAM 339 372
IPR002885 Pentatricopeptide_rpt TIGRFAM 412 435
IPR002885 Pentatricopeptide_rpt TIGRFAM 73 101
IPR002885 Pentatricopeptide_rpt TIGRFAM 475 508
IPR011990 TPR-like_helical_dom_sf Gene3D 30 161
IPR011990 TPR-like_helical_dom_sf Gene3D 398 490
IPR011990 TPR-like_helical_dom_sf Gene3D 162 235

No CAZYmes available for this sequence

No external refs found!