Zm00001d018141_T001

Description : Ribosomal RNA processing Brix domain protein

Gene families : OG_01_0006125 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006125_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d018141_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d018141_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_165
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_90

Type	GO Term	Name	Evidence	Source
BP	GO:0000027	ribosomal large subunit assembly	ISM	GOs from InterProScan
BP	GO:0000470	maturation of LSU-rRNA	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	ISM	GOs from InterProScan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0019843	rRNA binding	ISM	GOs from InterProScan
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	protein-RNA complex assembly	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071826	protein-RNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR039770	Rpf2	PANTHER	4	305
IPR007109	Brix	Pfam	36	232
IPR007109	Brix	ProSiteProfiles	29	239
IPR007109	Brix	SMART	32	233
IPR039770	Rpf2	PANTHER	4	305
IPR007109	Brix	SMART	32	233
IPR007109	Brix	ProSiteProfiles	29	239
IPR007109	Brix	Pfam	36	232

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d018141_T001

Expression Profile

Co-expression Networks

Functional Annotation