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  5. Zm00001d018148_T003

Zm00001d018148_T003


Description : repressor of lrx1


Gene families : OG_01_0003611 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003611_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d018148_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d018148_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_67
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_213


Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding ISM GOs from InterProScan
BP GO:0002098 tRNA wobble uridine modification ISM GOs from InterProScan
BP GO:0008033 tRNA processing ISM GOs from InterProScan
BP GO:0034227 tRNA thio-modification ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011063 TilS/TtcA_N Pfam 69 206
IPR014729 Rossmann-like_a/b/a_fold Gene3D 276 384
IPR014729 Rossmann-like_a/b/a_fold Gene3D 20 239
IPR035107 tRNA_thiolation_TtcA_Ctu1 PIRSF 263 369
IPR035107 tRNA_thiolation_TtcA_Ctu1 PIRSF 17 243
IPR032442 CTU1_C Pfam 337 367
IPR000541 Ncs6/Tuc1/Ctu1 Hamap 19 372
IPR000541 Ncs6/Tuc1/Ctu1 Hamap 19 372
IPR011063 TilS/TtcA_N Pfam 69 207
IPR014729 Rossmann-like_a/b/a_fold Gene3D 276 384
IPR014729 Rossmann-like_a/b/a_fold Gene3D 20 239
IPR035107 tRNA_thiolation_TtcA_Ctu1 PIRSF 263 369
IPR035107 tRNA_thiolation_TtcA_Ctu1 PIRSF 17 243
IPR032442 CTU1_C Pfam 337 367
IPR000541 Ncs6/Tuc1/Ctu1 PANTHER 20 390

No CAZYmes available for this sequence

No external refs found!