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  5. Zm00001d018466_T002

Zm00001d018466_T002


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0011484 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011484_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d018466_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d018466_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_63
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_132


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR035979 RBD_domain_sf SUPERFAMILY 201 286
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 198 287
IPR000504 RRM_dom Pfam 209 279
IPR000504 RRM_dom Pfam 118 188
IPR000504 RRM_dom ProSiteProfiles 116 194
IPR035979 RBD_domain_sf SUPERFAMILY 104 199
IPR048289 RRM2_NsCP33-like CDD 208 283
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 54 197
IPR000504 RRM_dom ProSiteProfiles 207 285
IPR000504 RRM_dom SMART 117 190
IPR000504 RRM_dom SMART 208 281
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 198 287
IPR000504 RRM_dom ProSiteProfiles 116 194
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 54 197
IPR000504 RRM_dom ProSiteProfiles 207 285
IPR035979 RBD_domain_sf SUPERFAMILY 104 199
IPR000504 RRM_dom SMART 117 190
IPR000504 RRM_dom SMART 208 281
IPR000504 RRM_dom Pfam 209 279
IPR000504 RRM_dom Pfam 118 188
IPR035979 RBD_domain_sf SUPERFAMILY 201 286

No CAZYmes available for this sequence

No external refs found!