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  5. Zm00001d018514_T003

Zm00001d018514_T003


Description : binding to TOMV RNA 1L (long form)


Gene families : OG_01_0007121 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007121_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d018514_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d018514_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_255
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_93


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036612 KH_dom_type_1_sf SUPERFAMILY 287 367
IPR036612 KH_dom_type_1_sf Gene3D 37 113
IPR036612 KH_dom_type_1_sf Gene3D 123 198
IPR036612 KH_dom_type_1_sf SUPERFAMILY 39 111
IPR036612 KH_dom_type_1_sf Gene3D 296 368
IPR004087 KH_dom SMART 38 111
IPR004087 KH_dom SMART 295 368
IPR004087 KH_dom SMART 122 195
IPR004088 KH_dom_type_1 Pfam 126 191
IPR004088 KH_dom_type_1 Pfam 42 108
IPR004088 KH_dom_type_1 Pfam 299 365
IPR036612 KH_dom_type_1_sf SUPERFAMILY 126 198
IPR036612 KH_dom_type_1_sf SUPERFAMILY 39 111
IPR004087 KH_dom SMART 38 111
IPR004087 KH_dom SMART 295 368
IPR004087 KH_dom SMART 122 195
IPR036612 KH_dom_type_1_sf SUPERFAMILY 126 198
IPR036612 KH_dom_type_1_sf Gene3D 296 368
IPR004088 KH_dom_type_1 Pfam 42 108
IPR004088 KH_dom_type_1 Pfam 126 191
IPR004088 KH_dom_type_1 Pfam 300 365
IPR036612 KH_dom_type_1_sf SUPERFAMILY 287 367
IPR036612 KH_dom_type_1_sf Gene3D 37 113
IPR036612 KH_dom_type_1_sf Gene3D 123 198

No CAZYmes available for this sequence

No external refs found!