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  5. Zm00001d018613_T004

Zm00001d018613_T004


Description : RNA-binding protein


Gene families : OG_01_0031862 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0031862_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d018613_T004
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d018613_T004
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_150
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_228


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
CC GO:0005634 nucleus ISM GOs from InterProScan
BP GO:0006396 RNA processing ISM GOs from InterProScan
CC GO:1990904 ribonucleoprotein complex ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom ProSiteProfiles 238 329
IPR002344 Lupus_La PRINTS 289 307
IPR002344 Lupus_La PRINTS 232 248
IPR002344 Lupus_La PRINTS 153 170
IPR002344 Lupus_La PRINTS 179 194
IPR002344 Lupus_La PRINTS 210 223
IPR006630 La_HTH ProSiteProfiles 140 231
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 229 333
IPR045180 La_dom_prot PANTHER 43 492
IPR006630 La_HTH Pfam 150 207
IPR035979 RBD_domain_sf SUPERFAMILY 231 338
IPR036388 WH-like_DNA-bd_sf Gene3D 143 228
IPR006630 La_HTH SMART 144 224
IPR034878 La-rel_plant_RRM CDD 238 326
IPR000504 RRM_dom SMART 239 323
IPR000504 RRM_dom Pfam 243 312
IPR036390 WH_DNA-bd_sf SUPERFAMILY 143 226
IPR000504 RRM_dom SMART 239 323
IPR034878 La-rel_plant_RRM CDD 238 326
IPR035979 RBD_domain_sf SUPERFAMILY 231 338
IPR006630 La_HTH SMART 144 224
IPR036388 WH-like_DNA-bd_sf Gene3D 143 228
IPR000504 RRM_dom Pfam 243 312
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 229 333
IPR002344 Lupus_La PRINTS 289 307
IPR002344 Lupus_La PRINTS 232 248
IPR002344 Lupus_La PRINTS 153 170
IPR002344 Lupus_La PRINTS 179 194
IPR002344 Lupus_La PRINTS 210 223
IPR045180 La_dom_prot PANTHER 33 497
IPR006630 La_HTH ProSiteProfiles 140 231
IPR036390 WH_DNA-bd_sf SUPERFAMILY 143 226
IPR000504 RRM_dom ProSiteProfiles 238 329
IPR006630 La_HTH Pfam 150 207

No CAZYmes available for this sequence

No external refs found!