Zm00001d018976_T003

Description : methyltransferase 1

Gene families : OG_01_0001735 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001735_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d018976_T003
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d018976_T003
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_291
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_235

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003682	chromatin binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003886	DNA (cytosine-5-)-methyltransferase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006304	DNA modification	None	Extended
BP	GO:0006305	DNA alkylation	None	Extended
BP	GO:0006306	DNA methylation	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008168	methyltransferase activity	ISM	GOs from InterProScan
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	None	Extended
MF	GO:0009008	DNA-methyltransferase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016741	transferase activity, transferring one-carbon groups	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0032776	DNA methylation on cytosine	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090116	C-5 methylation of cytosine	ISM	GOs from InterProScan
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001025	BAH_dom	Pfam	982	1121
IPR001025	BAH_dom	Pfam	817	944
IPR001525	C5_MeTfrase	NCBIfam	1167	1590
IPR017198	DNMT1-like	PIRSF	743	971
IPR017198	DNMT1-like	PIRSF	72	393
IPR017198	DNMT1-like	PIRSF	458	746
IPR017198	DNMT1-like	PIRSF	1488	1606
IPR017198	DNMT1-like	PIRSF	957	1493
IPR029063	SAM-dependent_MTases_sf	SUPERFAMILY	1166	1593
IPR022702	Cytosine_MeTrfase1_RFD	Pfam	175	310
IPR022702	Cytosine_MeTrfase1_RFD	Pfam	470	622
IPR043151	BAH_sf	Gene3D	781	962
IPR001525	C5_MeTfrase	ProSiteProfiles	1164	1598
IPR018117	C5_DNA_meth_AS	ProSitePatterns	1261	1273
IPR043151	BAH_sf	Gene3D	963	1168
IPR001025	BAH_dom	ProSiteProfiles	813	945
IPR031303	C5_meth_CS	ProSitePatterns	1573	1591
IPR001525	C5_MeTfrase	PRINTS	1348	1361
IPR001525	C5_MeTfrase	PRINTS	1165	1181
IPR001525	C5_MeTfrase	PRINTS	1302	1316
IPR001025	BAH_dom	ProSiteProfiles	996	1121
IPR001525	C5_MeTfrase	Pfam	1165	1214
IPR001525	C5_MeTfrase	Pfam	1248	1592
IPR001025	BAH_dom	SMART	813	945
IPR001025	BAH_dom	SMART	982	1121
IPR029063	SAM-dependent_MTases_sf	Gene3D	1169	1372
IPR001525	C5_MeTfrase	ProSiteProfiles	1164	1598
IPR001025	BAH_dom	Pfam	982	1121
IPR001025	BAH_dom	Pfam	817	944
IPR001525	C5_MeTfrase	Pfam	1166	1214
IPR001525	C5_MeTfrase	Pfam	1249	1592
IPR043151	BAH_sf	Gene3D	963	1168
IPR001025	BAH_dom	SMART	813	945
IPR001025	BAH_dom	SMART	982	1121
IPR001525	C5_MeTfrase	TIGRFAM	1167	1590
IPR018117	C5_DNA_meth_AS	ProSitePatterns	1261	1273
IPR001525	C5_MeTfrase	PRINTS	1348	1361
IPR001525	C5_MeTfrase	PRINTS	1165	1181
IPR001525	C5_MeTfrase	PRINTS	1302	1316
IPR029063	SAM-dependent_MTases_sf	SUPERFAMILY	1166	1593
IPR031303	C5_meth_CS	ProSitePatterns	1573	1591
IPR022702	Cytosine_MeTrfase1_RFD	Pfam	470	622
IPR022702	Cytosine_MeTrfase1_RFD	Pfam	175	309
IPR043151	BAH_sf	Gene3D	781	962
IPR001025	BAH_dom	ProSiteProfiles	996	1121
IPR017198	DNMT1-like	PIRSF	72	393
IPR017198	DNMT1-like	PIRSF	743	971
IPR017198	DNMT1-like	PIRSF	458	746
IPR017198	DNMT1-like	PIRSF	1488	1606
IPR017198	DNMT1-like	PIRSF	957	1493
IPR001025	BAH_dom	ProSiteProfiles	813	945

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d018976_T003

Expression Profile

Co-expression Networks

Functional Annotation