Zm00001d019114_T003

Description : RNA binding;RNA binding

Gene families : OG_01_0001481 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001481_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d019114_T003
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d019114_T003
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_301
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_111

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	ISM	GOs from InterProScan
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011990	TPR-like_helical_dom_sf	Gene3D	184	416
IPR003107	HAT	SMART	214	245
IPR003107	HAT	SMART	352	388
IPR003107	HAT	SMART	318	350
IPR003107	HAT	SMART	98	130
IPR003107	HAT	SMART	247	279
IPR045209	Rrp5	PANTHER	184	410
IPR008847	Suf	Pfam	310	408
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	187	408
IPR003107	HAT	SMART	214	245
IPR003107	HAT	SMART	352	388
IPR003107	HAT	SMART	318	350
IPR003107	HAT	SMART	98	130
IPR003107	HAT	SMART	247	279
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	187	408
IPR045209	Rrp5	PANTHER	34	410
IPR011990	TPR-like_helical_dom_sf	Gene3D	184	416
IPR008847	Suf	Pfam	310	409

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d019114_T003

Expression Profile

Co-expression Networks

Functional Annotation