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  5. Zm00001d019235_T001

Zm00001d019235_T001


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG_01_0006647 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006647_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d019235_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d019235_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_211
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_68


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 222 256
IPR011990 TPR-like_helical_dom_sf Gene3D 2 149
IPR011990 TPR-like_helical_dom_sf Gene3D 150 270
IPR002885 Pentatricopeptide_rpt Pfam 215 266
IPR002885 Pentatricopeptide_rpt NCBIfam 47 78
IPR002885 Pentatricopeptide_rpt NCBIfam 225 258
IPR002885 Pentatricopeptide_rpt NCBIfam 12 45
IPR002885 Pentatricopeptide_rpt NCBIfam 189 222
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 187 221
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 10 44
IPR002885 Pentatricopeptide_rpt Pfam 13 42
IPR002885 Pentatricopeptide_rpt Pfam 158 184
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 45 79
IPR002885 Pentatricopeptide_rpt Pfam 44 92
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 45 79
IPR002885 Pentatricopeptide_rpt Pfam 215 266
IPR002885 Pentatricopeptide_rpt TIGRFAM 225 258
IPR002885 Pentatricopeptide_rpt TIGRFAM 12 45
IPR002885 Pentatricopeptide_rpt TIGRFAM 47 78
IPR002885 Pentatricopeptide_rpt TIGRFAM 189 222
IPR002885 Pentatricopeptide_rpt Pfam 44 92
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 222 256
IPR002885 Pentatricopeptide_rpt Pfam 13 42
IPR002885 Pentatricopeptide_rpt Pfam 158 184
IPR011990 TPR-like_helical_dom_sf Gene3D 2 149
IPR011990 TPR-like_helical_dom_sf Gene3D 150 270
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 187 221
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 10 44

No CAZYmes available for this sequence

No external refs found!