1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001d019299_T001

Zm00001d019299_T001


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0004802 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004802_tree

Sequence : cds (download), rna (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d019299_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d019299_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_242
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_93


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
BP GO:0016226 iron-sulfur cluster assembly ISM GOs from InterProScan
CC GO:0097361 CIA complex ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 153 184
IPR001680 WD40_rpt ProSiteProfiles 203 235
IPR001680 WD40_rpt ProSiteProfiles 13 50
IPR020472 G-protein_beta_WD-40_rep PRINTS 329 343
IPR020472 G-protein_beta_WD-40_rep PRINTS 37 51
IPR020472 G-protein_beta_WD-40_rep PRINTS 222 236
IPR001680 WD40_rpt ProSiteProfiles 108 141
IPR019775 WD40_repeat_CS ProSitePatterns 127 141
IPR019775 WD40_repeat_CS ProSitePatterns 329 343
IPR001680 WD40_rpt SMART 299 342
IPR001680 WD40_rpt SMART 6 50
IPR001680 WD40_rpt SMART 191 235
IPR001680 WD40_rpt SMART 146 185
IPR001680 WD40_rpt SMART 56 96
IPR001680 WD40_rpt SMART 101 140
IPR001680 WD40_rpt SMART 251 290
IPR028608 CIAO1/Cia1 Hamap 5 345
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 7 347
IPR001680 WD40_rpt ProSiteProfiles 64 96
IPR001680 WD40_rpt Pfam 103 139
IPR001680 WD40_rpt Pfam 310 341
IPR001680 WD40_rpt Pfam 65 95
IPR001680 WD40_rpt Pfam 194 235
IPR001680 WD40_rpt Pfam 11 49
IPR001680 WD40_rpt Pfam 148 184
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 8 341
IPR001680 WD40_rpt ProSiteProfiles 309 344
IPR001680 WD40_rpt ProSiteProfiles 64 96
IPR001680 WD40_rpt Pfam 11 50
IPR001680 WD40_rpt Pfam 193 235
IPR001680 WD40_rpt Pfam 148 184
IPR001680 WD40_rpt Pfam 310 341
IPR001680 WD40_rpt Pfam 103 139
IPR001680 WD40_rpt Pfam 57 95
IPR001680 WD40_rpt ProSiteProfiles 309 344
IPR028608 CIAO1/Cia1 PANTHER 5 343
IPR019775 WD40_repeat_CS ProSitePatterns 127 141
IPR019775 WD40_repeat_CS ProSitePatterns 329 343
IPR001680 WD40_rpt ProSiteProfiles 153 184
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 7 347
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 8 341
IPR020472 G-protein_beta_WD-40_rep PRINTS 329 343
IPR020472 G-protein_beta_WD-40_rep PRINTS 37 51
IPR020472 G-protein_beta_WD-40_rep PRINTS 222 236
IPR001680 WD40_rpt ProSiteProfiles 203 235
IPR001680 WD40_rpt ProSiteProfiles 13 50
IPR001680 WD40_rpt SMART 299 342
IPR001680 WD40_rpt SMART 6 50
IPR001680 WD40_rpt SMART 191 235
IPR001680 WD40_rpt SMART 146 185
IPR001680 WD40_rpt SMART 56 96
IPR001680 WD40_rpt SMART 101 140
IPR001680 WD40_rpt SMART 251 290
IPR001680 WD40_rpt ProSiteProfiles 108 141
IPR028608 CIAO1/Cia1 Hamap 5 345

No CAZYmes available for this sequence

No external refs found!