Zm00001d019449_T004

Description : DEA(D/H)-box RNA helicase family protein

Gene families : OG_01_0010796 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010796_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d019449_T004
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d019449_T004
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_114
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_241

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR014001	Helicase_ATP-bd	SMART	107	313
IPR027417	P-loop_NTPase	SUPERFAMILY	164	446
IPR001650	Helicase_C	ProSiteProfiles	309	472
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	112	281
IPR001650	Helicase_C	SMART	352	433
IPR027417	P-loop_NTPase	Gene3D	301	475
IPR027417	P-loop_NTPase	Gene3D	46	300
IPR014001	Helicase_ATP-bd	ProSiteProfiles	119	296
IPR000629	RNA-helicase_DEAD-box_CS	ProSitePatterns	242	250
IPR001650	Helicase_C	Pfam	328	433
IPR014001	Helicase_ATP-bd	ProSiteProfiles	119	296
IPR027417	P-loop_NTPase	Gene3D	46	300
IPR000629	RNA-helicase_DEAD-box_CS	ProSitePatterns	242	250
IPR027417	P-loop_NTPase	Gene3D	301	475
IPR001650	Helicase_C	SMART	352	433
IPR014001	Helicase_ATP-bd	SMART	107	313
IPR027417	P-loop_NTPase	SUPERFAMILY	164	446
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	113	284
IPR001650	Helicase_C	Pfam	324	433
IPR001650	Helicase_C	ProSiteProfiles	309	472

No CAZYmes available for this sequence

External Links

No external refs found!