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  5. Zm00001d019648_T001

Zm00001d019648_T001


Description : 31-kDa RNA binding protein


Gene families : OG_01_0003430 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003430_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d019648_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d019648_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_147
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_277


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 166 275
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 276 367
IPR000504 RRM_dom ProSiteProfiles 283 361
IPR000504 RRM_dom Pfam 191 260
IPR000504 RRM_dom Pfam 285 355
IPR000504 RRM_dom SMART 190 263
IPR000504 RRM_dom SMART 284 357
IPR035979 RBD_domain_sf SUPERFAMILY 276 365
IPR000504 RRM_dom ProSiteProfiles 189 267
IPR035979 RBD_domain_sf SUPERFAMILY 184 281
IPR048289 RRM2_NsCP33-like CDD 284 359
IPR035979 RBD_domain_sf SUPERFAMILY 184 281
IPR000504 RRM_dom Pfam 285 355
IPR000504 RRM_dom Pfam 191 260
IPR035979 RBD_domain_sf SUPERFAMILY 276 365
IPR000504 RRM_dom ProSiteProfiles 283 361
IPR000504 RRM_dom ProSiteProfiles 189 267
IPR000504 RRM_dom SMART 190 263
IPR000504 RRM_dom SMART 284 357
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 166 275
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 276 367

No CAZYmes available for this sequence

No external refs found!