Zm00001d019856_T005

Description : PCF11P-similar protein 4

Gene families : OG_01_0006819 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006819_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d019856_T005
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d019856_T005
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_11
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_141

Type	GO Term	Name	Evidence	Source
MF	GO:0000993	RNA polymerase II complex binding	ISM	GOs from InterProScan
MF	GO:0001098	basal transcription machinery binding	None	Extended
MF	GO:0001099	basal RNA polymerase II transcription machinery binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006353	DNA-templated transcription termination	None	Extended
BP	GO:0006369	termination of RNA polymerase II transcription	ISM	GOs from InterProScan
BP	GO:0006378	mRNA polyadenylation	ISM	GOs from InterProScan
BP	GO:0006379	obsolete mRNA cleavage	ISM	GOs from InterProScan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0031123	RNA 3'-end processing	None	Extended
BP	GO:0031124	mRNA 3'-end processing	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043175	RNA polymerase core enzyme binding	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0070063	RNA polymerase binding	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045154	PCF11-like	PANTHER	47	1098
IPR006569	CID_dom	SMART	64	258
IPR047415	Pcf11_CID	CDD	68	246
IPR008942	ENTH_VHS	SUPERFAMILY	184	254
IPR006569	CID_dom	Pfam	175	242
IPR008942	ENTH_VHS	Gene3D	54	125
IPR008942	ENTH_VHS	Gene3D	173	258
IPR006569	CID_dom	ProSiteProfiles	61	261
IPR008942	ENTH_VHS	SUPERFAMILY	64	111
IPR006569	CID_dom	ProSiteProfiles	61	261
IPR006569	CID_dom	Pfam	175	242
IPR008942	ENTH_VHS	SUPERFAMILY	184	254
IPR006569	CID_dom	SMART	64	258
IPR045154	PCF11-like	PANTHER	27	1099
IPR008942	ENTH_VHS	SUPERFAMILY	64	111
IPR008942	ENTH_VHS	Gene3D	54	125
IPR008942	ENTH_VHS	Gene3D	173	258

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d019856_T005

Expression Profile

Co-expression Networks

Functional Annotation