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  5. Zm00001d019898_T001

Zm00001d019898_T001


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0012550 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012550_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d019898_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d019898_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_147
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_123


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 153 239
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 52 152
IPR035979 RBD_domain_sf SUPERFAMILY 164 235
IPR035979 RBD_domain_sf SUPERFAMILY 65 148
IPR000504 RRM_dom ProSiteProfiles 69 147
IPR000504 RRM_dom ProSiteProfiles 168 231
IPR000504 RRM_dom Pfam 170 234
IPR000504 RRM_dom Pfam 71 141
IPR000504 RRM_dom SMART 169 242
IPR000504 RRM_dom SMART 70 143
IPR000504 RRM_dom Pfam 170 233
IPR000504 RRM_dom Pfam 71 141
IPR035979 RBD_domain_sf SUPERFAMILY 164 235
IPR000504 RRM_dom SMART 169 242
IPR000504 RRM_dom SMART 70 143
IPR000504 RRM_dom ProSiteProfiles 69 147
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 153 239
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 52 152
IPR000504 RRM_dom ProSiteProfiles 168 231
IPR035979 RBD_domain_sf SUPERFAMILY 65 148

No CAZYmes available for this sequence

No external refs found!