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  5. Zm00001d019905_T003

Zm00001d019905_T003


Description : Argonaute family protein


Gene families : OG_01_0004407 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004407_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d019905_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d019905_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_17
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_49


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036397 RNaseH_sf Gene3D 644 921
IPR003100 PAZ_dom Pfam 296 422
IPR003100 PAZ_dom SMART 293 428
IPR003165 Piwi SMART 575 884
IPR036085 PAZ_dom_sf SUPERFAMILY 287 444
IPR003100 PAZ_dom ProSiteProfiles 293 406
IPR003165 Piwi ProSiteProfiles 575 884
IPR003165 Piwi Pfam 576 884
IPR032473 Argonaute_Mid_dom Pfam 486 565
IPR014811 ArgoL1 SMART 240 292
IPR045246 Piwi_ago-like CDD 450 878
IPR032472 ArgoL2 Pfam 432 476
IPR014811 ArgoL1 Pfam 242 289
IPR032474 Argonaute_N Pfam 72 230
IPR012337 RNaseH-like_sf SUPERFAMILY 560 882
IPR036085 PAZ_dom_sf SUPERFAMILY 287 444
IPR032473 Argonaute_Mid_dom Pfam 486 565
IPR003165 Piwi Pfam 576 884
IPR045246 Piwi_ago-like CDD 450 878
IPR032472 ArgoL2 Pfam 432 476
IPR036397 RNaseH_sf Gene3D 644 921
IPR003100 PAZ_dom ProSiteProfiles 293 406
IPR003100 PAZ_dom SMART 293 428
IPR003100 PAZ_dom Pfam 296 421
IPR032474 Argonaute_N Pfam 72 230
IPR003165 Piwi SMART 575 884
IPR014811 ArgoL1 SMART 240 292
IPR012337 RNaseH-like_sf SUPERFAMILY 560 882
IPR003165 Piwi ProSiteProfiles 575 884
IPR014811 ArgoL1 Pfam 242 289

No CAZYmes available for this sequence

No external refs found!