Zm00001d020412_T001

Description : high mobility group A

Gene families : OG_01_0008657 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008657_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d020412_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d020412_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_293
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_127

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	ISM	GOs from InterProScan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR017956	AT_hook_DNA-bd_motif	SMART	262	274
IPR017956	AT_hook_DNA-bd_motif	SMART	235	247
IPR017956	AT_hook_DNA-bd_motif	SMART	166	178
IPR017956	AT_hook_DNA-bd_motif	SMART	200	212
IPR036388	WH-like_DNA-bd_sf	Gene3D	13	85
IPR017956	AT_hook_DNA-bd_motif	PRINTS	233	243
IPR017956	AT_hook_DNA-bd_motif	PRINTS	198	209
IPR017956	AT_hook_DNA-bd_motif	PRINTS	166	176
IPR005818	Histone_H1/H5_H15	ProSiteProfiles	15	85
IPR005818	Histone_H1/H5_H15	Pfam	17	75
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	12	86
IPR005818	Histone_H1/H5_H15	SMART	13	80
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	12	86
IPR005818	Histone_H1/H5_H15	ProSiteProfiles	15	85
IPR005818	Histone_H1/H5_H15	Pfam	17	75
IPR017956	AT_hook_DNA-bd_motif	SMART	262	274
IPR017956	AT_hook_DNA-bd_motif	SMART	235	247
IPR017956	AT_hook_DNA-bd_motif	SMART	166	178
IPR017956	AT_hook_DNA-bd_motif	SMART	200	212
IPR036388	WH-like_DNA-bd_sf	Gene3D	13	85
IPR017956	AT_hook_DNA-bd_motif	PRINTS	233	243
IPR017956	AT_hook_DNA-bd_motif	PRINTS	198	209
IPR017956	AT_hook_DNA-bd_motif	PRINTS	166	176
IPR005818	Histone_H1/H5_H15	SMART	13	80

No CAZYmes available for this sequence

External Links

No external refs found!