Zm00001d020419_T003

Description : Rad23 UV excision repair protein family

Gene families : OG_01_0079898 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0079898_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d020419_T003
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d020419_T003
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_287
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_252

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006289	nucleotide-excision repair	ISM	GOs from InterProScan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	ISM	GOs from InterProScan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR009060	UBA-like_sf	SUPERFAMILY	178	231
IPR029071	Ubiquitin-like_domsf	SUPERFAMILY	1	80
IPR015940	UBA	ProSiteProfiles	189	232
IPR015940	UBA	ProSiteProfiles	402	442
IPR015940	UBA	SMART	404	441
IPR015940	UBA	SMART	191	231
IPR036353	XPC-bd_sf	SUPERFAMILY	347	384
IPR036353	XPC-bd_sf	Gene3D	345	378
IPR015940	UBA	Pfam	403	439
IPR015940	UBA	Pfam	195	229
IPR000626	Ubiquitin-like_dom	SMART	1	75
IPR015360	XPC-bd	Pfam	347	377
IPR000626	Ubiquitin-like_dom	Pfam	3	76
IPR009060	UBA-like_sf	SUPERFAMILY	385	447
IPR004806	Rad23	PRINTS	398	414
IPR004806	Rad23	PRINTS	415	429
IPR004806	Rad23	PRINTS	430	445
IPR004806	Rad23	PRINTS	348	370
IPR000626	Ubiquitin-like_dom	ProSiteProfiles	1	79
IPR036353	XPC-bd_sf	Gene3D	345	378
IPR029071	Ubiquitin-like_domsf	SUPERFAMILY	1	80
IPR000626	Ubiquitin-like_dom	SMART	1	75
IPR015940	UBA	Pfam	403	439
IPR015940	UBA	Pfam	194	229
IPR036353	XPC-bd_sf	SUPERFAMILY	347	384
IPR015940	UBA	SMART	404	441
IPR015940	UBA	SMART	191	231
IPR015360	XPC-bd	Pfam	347	377
IPR000626	Ubiquitin-like_dom	ProSiteProfiles	1	79
IPR015940	UBA	ProSiteProfiles	189	232
IPR004806	Rad23	PRINTS	398	414
IPR004806	Rad23	PRINTS	415	429
IPR004806	Rad23	PRINTS	430	445
IPR004806	Rad23	PRINTS	348	370
IPR009060	UBA-like_sf	SUPERFAMILY	385	447
IPR000626	Ubiquitin-like_dom	Pfam	3	76
IPR015940	UBA	ProSiteProfiles	402	442
IPR009060	UBA-like_sf	SUPERFAMILY	178	231

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d020419_T003

Expression Profile

Co-expression Networks

Functional Annotation