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  5. Zm00001d020436_T001

Zm00001d020436_T001


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0019643 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019643_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d020436_T001
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d020436_T001
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_137
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_7


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 454 503
IPR002885 Pentatricopeptide_rpt Pfam 143 186
IPR002885 Pentatricopeptide_rpt Pfam 209 258
IPR002885 Pentatricopeptide_rpt Pfam 541 589
IPR002885 Pentatricopeptide_rpt Pfam 314 363
IPR002885 Pentatricopeptide_rpt Pfam 385 433
IPR011990 TPR-like_helical_dom_sf Gene3D 109 202
IPR002885 Pentatricopeptide_rpt Pfam 276 307
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 280 314
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 455 489
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 420 454
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 210 244
IPR011990 TPR-like_helical_dom_sf Gene3D 203 274
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 140 174
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 542 576
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 315 349
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 175 209
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 115 492
IPR002885 Pentatricopeptide_rpt NCBIfam 422 456
IPR002885 Pentatricopeptide_rpt NCBIfam 143 176
IPR002885 Pentatricopeptide_rpt NCBIfam 282 315
IPR002885 Pentatricopeptide_rpt NCBIfam 318 351
IPR002885 Pentatricopeptide_rpt NCBIfam 388 421
IPR002885 Pentatricopeptide_rpt NCBIfam 212 245
IPR002885 Pentatricopeptide_rpt NCBIfam 457 491
IPR002885 Pentatricopeptide_rpt NCBIfam 247 281
IPR002885 Pentatricopeptide_rpt Pfam 114 136
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 385 419
IPR011990 TPR-like_helical_dom_sf Gene3D 369 522
IPR011990 TPR-like_helical_dom_sf Gene3D 276 368
IPR011990 TPR-like_helical_dom_sf Gene3D 523 618
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 350 384
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 245 279
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 577 611
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 140 174
IPR011990 TPR-like_helical_dom_sf Gene3D 109 202
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 577 611
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 455 489
IPR002885 Pentatricopeptide_rpt Pfam 209 258
IPR002885 Pentatricopeptide_rpt Pfam 454 503
IPR002885 Pentatricopeptide_rpt Pfam 143 186
IPR002885 Pentatricopeptide_rpt Pfam 385 432
IPR002885 Pentatricopeptide_rpt Pfam 541 589
IPR002885 Pentatricopeptide_rpt Pfam 314 363
IPR002885 Pentatricopeptide_rpt Pfam 276 307
IPR011990 TPR-like_helical_dom_sf Gene3D 203 274
IPR011990 TPR-like_helical_dom_sf Gene3D 369 522
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 245 279
IPR011990 TPR-like_helical_dom_sf Gene3D 276 368
IPR011990 TPR-like_helical_dom_sf Gene3D 523 618
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 280 314
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 350 384
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 210 244
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 385 419
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 542 576
IPR002885 Pentatricopeptide_rpt TIGRFAM 422 456
IPR002885 Pentatricopeptide_rpt TIGRFAM 457 491
IPR002885 Pentatricopeptide_rpt TIGRFAM 212 245
IPR002885 Pentatricopeptide_rpt TIGRFAM 143 176
IPR002885 Pentatricopeptide_rpt TIGRFAM 318 351
IPR002885 Pentatricopeptide_rpt TIGRFAM 282 315
IPR002885 Pentatricopeptide_rpt TIGRFAM 388 421
IPR002885 Pentatricopeptide_rpt TIGRFAM 247 281
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 315 349
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 175 209
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 420 454
IPR002885 Pentatricopeptide_rpt Pfam 114 136
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 115 492

No CAZYmes available for this sequence

No external refs found!