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  5. Zm00001d020799_T003

Zm00001d020799_T003


Description : isoamylase 3


Gene families : OG_01_0000800 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000800_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d020799_T003
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d020799_T003
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_274
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_170


Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity ISM GOs from InterProScan
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR006047 Glyco_hydro_13_cat_dom Pfam 259 437
IPR006047 Glyco_hydro_13_cat_dom SMART 238 667
IPR013783 Ig-like_fold Gene3D 74 209
IPR004193 Glyco_hydro_13_N Pfam 92 188
IPR014756 Ig_E-set SUPERFAMILY 88 223
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 214 675
IPR044505 GlgX_Isoamylase_N_E_set CDD 91 238
IPR013780 Glyco_hydro_b Gene3D 682 754
IPR004193 Glyco_hydro_13_N Pfam 92 188
IPR044505 GlgX_Isoamylase_N_E_set CDD 91 238
IPR013783 Ig-like_fold Gene3D 74 209
IPR006047 Glyco_hydro_13_cat_dom SMART 238 667
IPR006047 Glyco_hydro_13_cat_dom Pfam 259 433
IPR013780 Glyco_hydro_b Gene3D 682 754
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 214 675
IPR014756 Ig_E-set SUPERFAMILY 88 223
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM48 76 803 3.3e-13 92 190
No external refs found!