Zm00001d020853_T004

Description : RNA cyclase family protein

Gene families : OG_01_0013485 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013485_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d020853_T004
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d020853_T004
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_255
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_215

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005730	nucleolus	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0022613	ribonucleoprotein complex biogenesis	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042254	ribosome biogenesis	ISM	GOs from InterProScan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044085	cellular component biogenesis	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000228	RNA3'_term_phos_cyc	PANTHER	11	374
IPR013791	RNA3'-term_phos_cycl_insert	Pfam	184	297
IPR016443	RNA3'_term_phos_cyc_type_2	CDD	3	353
IPR036553	RPTC_insert	Gene3D	185	294
IPR016443	RNA3'_term_phos_cyc_type_2	NCBIfam	9	376
IPR037136	RNA3'_phos_cyclase_dom_sf	Gene3D	11	354
IPR020719	RNA3'_term_phos_cycl-like_CS	ProSitePatterns	157	167
IPR023797	RNA3'_phos_cyclase_dom	Pfam	11	350
IPR013792	RNA3'P_cycl/enolpyr_Trfase_a/b	SUPERFAMILY	11	232
IPR013791	RNA3'-term_phos_cycl_insert	Pfam	184	297
IPR023797	RNA3'_phos_cyclase_dom	Pfam	11	350
IPR016443	RNA3'_term_phos_cyc_type_2	CDD	3	353
IPR037136	RNA3'_phos_cyclase_dom_sf	Gene3D	11	354
IPR013792	RNA3'P_cycl/enolpyr_Trfase_a/b	SUPERFAMILY	11	232
IPR016443	RNA3'_term_phos_cyc_type_2	PANTHER	1	376
IPR020719	RNA3'_term_phos_cycl-like_CS	ProSitePatterns	157	167
IPR000228	RNA3'_term_phos_cyc	PANTHER	1	376
IPR036553	RPTC_insert	Gene3D	185	294
IPR016443	RNA3'_term_phos_cyc_type_2	TIGRFAM	9	376

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d020853_T004

Expression Profile

Co-expression Networks

Functional Annotation