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Description : RNA binding
Gene families : OG_01_0001992 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001992_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d021188_T006 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d021188_T006 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_157 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_58 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | ISM | GOs from InterProScan |
| MF | GO:0003723 | RNA binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR000504 | RRM_dom | ProSiteProfiles | 40 | 113 |
| IPR000504 | RRM_dom | SMART | 151 | 218 |
| IPR000504 | RRM_dom | SMART | 267 | 336 |
| IPR000504 | RRM_dom | SMART | 41 | 109 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 138 | 249 |
| IPR000504 | RRM_dom | ProSiteProfiles | 150 | 222 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 258 | 354 |
| IPR012921 | SPOC_C | Pfam | 470 | 591 |
| IPR000504 | RRM_dom | Pfam | 279 | 333 |
| IPR000504 | RRM_dom | Pfam | 42 | 106 |
| IPR000504 | RRM_dom | Pfam | 152 | 215 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 32 | 114 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 141 | 256 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 36 | 113 |
| IPR000504 | RRM_dom | ProSiteProfiles | 266 | 340 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 261 | 343 |
| IPR000504 | RRM_dom | ProSiteProfiles | 150 | 222 |
| IPR000504 | RRM_dom | Pfam | 42 | 105 |
| IPR000504 | RRM_dom | Pfam | 152 | 215 |
| IPR000504 | RRM_dom | Pfam | 279 | 333 |
| IPR000504 | RRM_dom | ProSiteProfiles | 266 | 340 |
| IPR000504 | RRM_dom | SMART | 151 | 218 |
| IPR000504 | RRM_dom | SMART | 267 | 336 |
| IPR000504 | RRM_dom | SMART | 41 | 109 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 258 | 354 |
| IPR012921 | SPOC_C | Pfam | 469 | 584 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 36 | 113 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 138 | 249 |
| IPR000504 | RRM_dom | ProSiteProfiles | 40 | 113 |
| IPR035979 | RBD_domain_sf | SUPERFAMILY | 261 | 343 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 141 | 256 |
| IPR012677 | Nucleotide-bd_a/b_plait_sf | Gene3D | 32 | 114 |
No CAZYmes available for this sequence
| No external refs found! |