Zm00001d021258_T001

Description : PIF1 helicase

Gene families : OG_01_0006459 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006459_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d021258_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d021258_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_88
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_209

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	ISM	GOs from InterProScan
BP	GO:0006508	proteolysis	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0006996	organelle organization	None	Extended
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032200	telomere organization	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051276	chromosome organization	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR025476	Helitron_helicase-like	Pfam	604	785
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	2248	2322
IPR027417	P-loop_NTPase	SUPERFAMILY	1285	1555
IPR027417	P-loop_NTPase	Gene3D	1501	1560
IPR003653	Peptidase_C48_C	Pfam	1593	1788
IPR003653	Peptidase_C48_C	ProSiteProfiles	1560	1766
IPR038765	Papain-like_cys_pep_sf	SUPERFAMILY	1590	1794
IPR049163	Pif1-like_2B_dom	Pfam	1420	1466
IPR027417	P-loop_NTPase	SUPERFAMILY	1142	1266
IPR010285	DNA_helicase_pif1-like	Pfam	1145	1325
IPR036388	WH-like_DNA-bd_sf	Gene3D	2253	2321
IPR027417	P-loop_NTPase	Gene3D	1142	1286
IPR038765	Papain-like_cys_pep_sf	SUPERFAMILY	1590	1794
IPR027417	P-loop_NTPase	Gene3D	1142	1286
IPR010285	DNA_helicase_pif1-like	Pfam	1145	1465
IPR025476	Helitron_helicase-like	Pfam	604	785
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	2248	2322
IPR027417	P-loop_NTPase	SUPERFAMILY	1285	1555
IPR003653	Peptidase_C48_C	ProSiteProfiles	1560	1766
IPR003653	Peptidase_C48_C	Pfam	1593	1788
IPR036388	WH-like_DNA-bd_sf	Gene3D	2253	2321
IPR027417	P-loop_NTPase	Gene3D	1501	1560
IPR027417	P-loop_NTPase	SUPERFAMILY	1142	1266

No CAZYmes available for this sequence

External Links

No external refs found!

Zm00001d021258_T001

Expression Profile

Co-expression Networks

Functional Annotation