- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : PHYTOENE SYNTHASE
Gene families : OG_01_0000220 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000220_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d021410_T001 | |
| Neighborhood | Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d021410_T001 | |
| Cluster | Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_169 | |
| Cluster | Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_16 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004311 | farnesyltranstransferase activity | ISM | GOs from InterProScan |
| BP | GO:0009058 | biosynthetic process | ISM | GOs from InterProScan |
| MF | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002060 | Squ/phyt_synthse | Pfam | 135 | 389 |
| IPR002060 | Squ/phyt_synthse | SFLD | 124 | 402 |
| IPR033904 | Trans_IPPS_HH | CDD | 129 | 391 |
| IPR019845 | Squalene/phytoene_synthase_CS | ProSitePatterns | 277 | 302 |
| IPR008949 | Isoprenoid_synthase_dom_sf | Gene3D | 121 | 399 |
| IPR044843 | Trans_IPPS_bact-type | SFLD | 124 | 402 |
| IPR008949 | Isoprenoid_synthase_dom_sf | SUPERFAMILY | 127 | 404 |
| IPR019845 | Squalene/phytoene_synthase_CS | ProSitePatterns | 241 | 256 |
| IPR044843 | Trans_IPPS_bact-type | SFLD | 124 | 402 |
| IPR008949 | Isoprenoid_synthase_dom_sf | SUPERFAMILY | 127 | 404 |
| IPR019845 | Squalene/phytoene_synthase_CS | ProSitePatterns | 241 | 256 |
| IPR033904 | Trans_IPPS_HH | CDD | 129 | 391 |
| IPR019845 | Squalene/phytoene_synthase_CS | ProSitePatterns | 277 | 302 |
| IPR002060 | Squ/phyt_synthse | Pfam | 135 | 388 |
| IPR008949 | Isoprenoid_synthase_dom_sf | Gene3D | 121 | 399 |
| IPR002060 | Squ/phyt_synthse | SFLD | 124 | 402 |
No CAZYmes available for this sequence
| No external refs found! |