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  5. Zm00001d021541_T002

Zm00001d021541_T002


Description : chromatin remodeling 4


Gene families : OG_01_0005048 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005048_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d021541_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d021541_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_81
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_141


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
MF GO:0140658 ATP-dependent chromatin remodeler activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001650 Helicase_C ProSiteProfiles 1011 1171
IPR009463 DUF1087 SMART 1283 1348
IPR009463 DUF1087 Pfam 1291 1341
IPR000953 Chromo/chromo_shadow_dom SMART 536 591
IPR000953 Chromo/chromo_shadow_dom SMART 601 661
IPR001005 SANT/Myb ProSiteProfiles 1711 1763
IPR001965 Znf_PHD SMART 77 120
IPR019787 Znf_PHD-finger ProSiteProfiles 75 122
IPR023780 Chromo_domain Pfam 604 655
IPR016197 Chromo-like_dom_sf SUPERFAMILY 594 654
IPR019787 Znf_PHD-finger Pfam 78 119
IPR014001 Helicase_ATP-bd SMART 689 893
IPR027417 P-loop_NTPase SUPERFAMILY 919 1173
IPR001650 Helicase_C Pfam 1016 1123
IPR019786 Zinc_finger_PHD-type_CS ProSitePatterns 78 119
IPR000953 Chromo/chromo_shadow_dom ProSiteProfiles 538 589
IPR027417 P-loop_NTPase Gene3D 927 1154
IPR001650 Helicase_C SMART 1038 1123
IPR016197 Chromo-like_dom_sf SUPERFAMILY 530 592
IPR009057 Homeobox-like_sf SUPERFAMILY 1715 1765
IPR038718 SNF2-like_sf Gene3D 684 926
IPR014001 Helicase_ATP-bd ProSiteProfiles 705 882
IPR027417 P-loop_NTPase SUPERFAMILY 663 917
IPR000330 SNF2_N Pfam 696 985
IPR013083 Znf_RING/FYVE/PHD Gene3D 68 121
IPR011011 Znf_FYVE_PHD SUPERFAMILY 72 125
IPR001005 SANT/Myb ProSiteProfiles 1711 1763
IPR014001 Helicase_ATP-bd ProSiteProfiles 705 882
IPR009463 DUF1087 SMART 1283 1348
IPR000953 Chromo/chromo_shadow_dom SMART 601 661
IPR000953 Chromo/chromo_shadow_dom SMART 536 591
IPR016197 Chromo-like_dom_sf SUPERFAMILY 594 654
IPR027417 P-loop_NTPase Gene3D 927 1154
IPR001650 Helicase_C ProSiteProfiles 1011 1171
IPR011011 Znf_FYVE_PHD SUPERFAMILY 72 125
IPR001965 Znf_PHD SMART 77 120
IPR023780 Chromo_domain Pfam 605 654
IPR009057 Homeobox-like_sf SUPERFAMILY 1715 1765
IPR001650 Helicase_C Pfam 1015 1123
IPR000330 SNF2_N Pfam 711 986
IPR009463 DUF1087 Pfam 1291 1341
IPR014001 Helicase_ATP-bd SMART 689 893
IPR000953 Chromo/chromo_shadow_dom ProSiteProfiles 538 589
IPR027417 P-loop_NTPase SUPERFAMILY 663 917
IPR001650 Helicase_C SMART 1038 1123
IPR019787 Znf_PHD-finger ProSiteProfiles 75 122
IPR013083 Znf_RING/FYVE/PHD Gene3D 68 121
IPR019787 Znf_PHD-finger Pfam 78 121
IPR027417 P-loop_NTPase SUPERFAMILY 919 1173
IPR019786 Zinc_finger_PHD-type_CS ProSitePatterns 78 119
IPR038718 SNF2-like_sf Gene3D 684 926
IPR016197 Chromo-like_dom_sf SUPERFAMILY 530 592

No CAZYmes available for this sequence

No external refs found!