Zm00001d021607_T001

Description : Helicase protein with RING/U-box domain

Gene families : OG_01_0002699 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002699_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d021607_T001
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d021607_T001
Cluster	Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_76
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_105

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR014001	Helicase_ATP-bd	ProSiteProfiles	157	426
IPR014001	Helicase_ATP-bd	SMART	140	432
IPR001650	Helicase_C	Pfam	680	794
IPR001841	Znf_RING	SMART	597	636
IPR017907	Znf_RING_CS	ProSitePatterns	612	621
IPR013083	Znf_RING/FYVE/PHD	Gene3D	589	664
IPR001841	Znf_RING	ProSiteProfiles	597	637
IPR027417	P-loop_NTPase	SUPERFAMILY	500	849
IPR027417	P-loop_NTPase	Gene3D	510	850
IPR038718	SNF2-like_sf	Gene3D	299	457
IPR038718	SNF2-like_sf	Gene3D	146	290
IPR018957	Znf_C3HC4_RING-type	Pfam	597	636
IPR001650	Helicase_C	ProSiteProfiles	680	840
IPR000330	SNF2_N	Pfam	147	572
IPR027417	P-loop_NTPase	SUPERFAMILY	136	498
IPR001650	Helicase_C	SMART	711	794
IPR038718	SNF2-like_sf	Gene3D	146	290
IPR027417	P-loop_NTPase	SUPERFAMILY	136	498
IPR000330	SNF2_N	Pfam	159	573
IPR014001	Helicase_ATP-bd	SMART	140	432
IPR027417	P-loop_NTPase	Gene3D	510	850
IPR001841	Znf_RING	ProSiteProfiles	597	637
IPR038718	SNF2-like_sf	Gene3D	299	457
IPR014001	Helicase_ATP-bd	ProSiteProfiles	157	426
IPR001650	Helicase_C	ProSiteProfiles	680	840
IPR001650	Helicase_C	Pfam	683	794
IPR017907	Znf_RING_CS	ProSitePatterns	612	621
IPR018957	Znf_C3HC4_RING-type	Pfam	597	636
IPR027417	P-loop_NTPase	SUPERFAMILY	500	849
IPR001841	Znf_RING	SMART	597	636
IPR013083	Znf_RING/FYVE/PHD	Gene3D	589	664
IPR001650	Helicase_C	SMART	711	794

No CAZYmes available for this sequence

External Links

No external refs found!