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  5. Zm00001d021633_T006

Zm00001d021633_T006


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0006375 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006375_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d021633_T006
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d021633_T006
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_67
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_185


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 298 427
IPR035979 RBD_domain_sf SUPERFAMILY 81 194
IPR000504 RRM_dom ProSiteProfiles 114 196
IPR035979 RBD_domain_sf SUPERFAMILY 208 394
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 194 297
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 113 193
IPR000504 RRM_dom Pfam 211 281
IPR000504 RRM_dom Pfam 321 384
IPR000504 RRM_dom Pfam 141 184
IPR000504 RRM_dom ProSiteProfiles 319 391
IPR000504 RRM_dom SMART 210 284
IPR000504 RRM_dom SMART 320 387
IPR000504 RRM_dom SMART 115 190
IPR000504 RRM_dom ProSiteProfiles 209 288
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 113 193
IPR035979 RBD_domain_sf SUPERFAMILY 81 194
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 194 297
IPR000504 RRM_dom ProSiteProfiles 114 196
IPR000504 RRM_dom Pfam 321 384
IPR000504 RRM_dom Pfam 139 185
IPR000504 RRM_dom Pfam 211 281
IPR035979 RBD_domain_sf SUPERFAMILY 208 394
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 298 427
IPR000504 RRM_dom SMART 210 284
IPR000504 RRM_dom SMART 320 387
IPR000504 RRM_dom SMART 115 190
IPR000504 RRM_dom ProSiteProfiles 209 288
IPR000504 RRM_dom ProSiteProfiles 319 391

No CAZYmes available for this sequence

No external refs found!