Zm00001d021864_T001

Description : splicing factor Prp18 family protein

Gene families : OG_01_0015262 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0015262_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d021864_T001	No neighbors in network
Neighborhood	Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d021864_T001
Cluster	Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_205

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005681	spliceosomal complex	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR014906	PRP4-like	Pfam	129	155
IPR014906	PRP4-like	SMART	124	177
IPR036285	PRP4-like_sf	Gene3D	101	174
IPR004098	Prp18	Pfam	256	396
IPR039979	PRPF18	PANTHER	1	408
IPR036285	PRP4-like_sf	SUPERFAMILY	117	159
IPR014906	PRP4-like	Pfam	129	155
IPR014906	PRP4-like	SMART	124	177
IPR036285	PRP4-like_sf	Gene3D	101	174
IPR039979	PRPF18	PANTHER	1	414
IPR036285	PRP4-like_sf	SUPERFAMILY	117	159
IPR004098	Prp18	Pfam	256	396

No CAZYmes available for this sequence

External Links

No external refs found!