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  5. Zm00001d021871_T002

Zm00001d021871_T002


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0004348 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004348_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d021871_T002
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d021871_T002
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_223
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_11


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 572 786
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 574 610
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 434 468
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 187 221
IPR002885 Pentatricopeptide_rpt Pfam 456 494
IPR002885 Pentatricopeptide_rpt Pfam 327 375
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 226 636
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 257 291
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 646 680
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 222 256
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 716 750
IPR002885 Pentatricopeptide_rpt Pfam 295 322
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 152 186
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 504 538
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 292 326
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 364 398
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 539 573
IPR011990 TPR-like_helical_dom_sf Gene3D 463 571
IPR011990 TPR-like_helical_dom_sf Gene3D 392 462
IPR011990 TPR-like_helical_dom_sf Gene3D 90 250
IPR011990 TPR-like_helical_dom_sf Gene3D 322 391
IPR011990 TPR-like_helical_dom_sf Gene3D 251 321
IPR002885 Pentatricopeptide_rpt Pfam 398 445
IPR002885 Pentatricopeptide_rpt Pfam 504 552
IPR002885 Pentatricopeptide_rpt Pfam 221 268
IPR002885 Pentatricopeptide_rpt Pfam 610 658
IPR002885 Pentatricopeptide_rpt Pfam 156 200
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 611 645
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 329 363
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 399 433
IPR002885 Pentatricopeptide_rpt NCBIfam 436 470
IPR002885 Pentatricopeptide_rpt NCBIfam 259 293
IPR002885 Pentatricopeptide_rpt NCBIfam 295 323
IPR002885 Pentatricopeptide_rpt NCBIfam 190 222
IPR002885 Pentatricopeptide_rpt NCBIfam 614 647
IPR002885 Pentatricopeptide_rpt NCBIfam 541 572
IPR002885 Pentatricopeptide_rpt NCBIfam 225 257
IPR002885 Pentatricopeptide_rpt NCBIfam 577 612
IPR002885 Pentatricopeptide_rpt NCBIfam 506 540
IPR002885 Pentatricopeptide_rpt NCBIfam 366 400
IPR002885 Pentatricopeptide_rpt NCBIfam 331 365
IPR002885 Pentatricopeptide_rpt NCBIfam 401 434
IPR002885 Pentatricopeptide_rpt NCBIfam 155 188
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 611 645
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 222 256
IPR002885 Pentatricopeptide_rpt Pfam 391 446
IPR002885 Pentatricopeptide_rpt Pfam 456 494
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 152 186
IPR002885 Pentatricopeptide_rpt Pfam 155 184
IPR011990 TPR-like_helical_dom_sf Gene3D 463 571
IPR011990 TPR-like_helical_dom_sf Gene3D 392 462
IPR011990 TPR-like_helical_dom_sf Gene3D 90 250
IPR011990 TPR-like_helical_dom_sf Gene3D 322 391
IPR011990 TPR-like_helical_dom_sf Gene3D 251 321
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 504 538
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 329 363
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 399 433
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 539 573
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 364 398
IPR011990 TPR-like_helical_dom_sf Gene3D 572 786
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 716 750
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 574 610
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 292 326
IPR011990 TPR-like_helical_dom_sf SUPERFAMILY 226 636
IPR002885 Pentatricopeptide_rpt Pfam 186 233
IPR002885 Pentatricopeptide_rpt Pfam 291 337
IPR002885 Pentatricopeptide_rpt Pfam 504 552
IPR002885 Pentatricopeptide_rpt Pfam 610 657
IPR002885 Pentatricopeptide_rpt TIGRFAM 225 257
IPR002885 Pentatricopeptide_rpt TIGRFAM 366 400
IPR002885 Pentatricopeptide_rpt TIGRFAM 436 470
IPR002885 Pentatricopeptide_rpt TIGRFAM 155 188
IPR002885 Pentatricopeptide_rpt TIGRFAM 295 323
IPR002885 Pentatricopeptide_rpt TIGRFAM 577 612
IPR002885 Pentatricopeptide_rpt TIGRFAM 259 293
IPR002885 Pentatricopeptide_rpt TIGRFAM 614 647
IPR002885 Pentatricopeptide_rpt TIGRFAM 506 540
IPR002885 Pentatricopeptide_rpt TIGRFAM 190 222
IPR002885 Pentatricopeptide_rpt TIGRFAM 331 365
IPR002885 Pentatricopeptide_rpt TIGRFAM 541 572
IPR002885 Pentatricopeptide_rpt TIGRFAM 401 434
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 187 221
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 646 680
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 434 468
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 257 291

No CAZYmes available for this sequence

No external refs found!