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  5. Zm00001d021950_T007

Zm00001d021950_T007


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0002159 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002159_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea mays coexpression network - v0.2 (X-meeting 2023): Zm00001d021950_T007
Neighborhood Zea mays coexpression nextwork - Leiboff and Hake 2019: Zm00001d021950_T007
Cluster Zea mays HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_61
Cluster Zea mays HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_213


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 25 109
IPR035979 RBD_domain_sf SUPERFAMILY 122 227
IPR000504 RRM_dom ProSiteProfiles 27 103
IPR000504 RRM_dom SMART 127 199
IPR000504 RRM_dom SMART 28 99
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 123 210
IPR000504 RRM_dom ProSiteProfiles 126 203
IPR000504 RRM_dom Pfam 29 93
IPR000504 RRM_dom Pfam 128 194
IPR035979 RBD_domain_sf SUPERFAMILY 22 124
IPR035979 RBD_domain_sf SUPERFAMILY 122 227
IPR000504 RRM_dom SMART 127 199
IPR000504 RRM_dom SMART 28 99
IPR034131 DAZAP1_RRM2 CDD 124 203
IPR000504 RRM_dom ProSiteProfiles 126 203
IPR035979 RBD_domain_sf SUPERFAMILY 22 124
IPR000504 RRM_dom Pfam 128 194
IPR000504 RRM_dom Pfam 29 94
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 123 210
IPR000504 RRM_dom ProSiteProfiles 27 103
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 25 109

No CAZYmes available for this sequence

No external refs found!